Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N8E87_RS10050 Genome accession   NZ_CP104917
Coordinates   2061608..2063143 (+) Length   511 a.a.
NCBI ID   WP_035686457.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain AP-2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2056608..2068143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8E87_RS10030 (N8E87_10030) selB 2056673..2058532 (-) 1860 WP_264244476.1 selenocysteine-specific translation elongation factor -
  N8E87_RS10035 (N8E87_10035) selA 2058529..2059914 (-) 1386 WP_035686450.1 L-seryl-tRNA(Sec) selenium transferase -
  N8E87_RS10040 (N8E87_10040) - 2060159..2060497 (-) 339 WP_035686453.1 YggL family protein -
  N8E87_RS10045 (N8E87_10045) trmB 2060527..2061279 (-) 753 WP_264244478.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  N8E87_RS10050 (N8E87_10050) comM 2061608..2063143 (+) 1536 WP_035686457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N8E87_RS10055 (N8E87_10055) - 2063253..2064785 (-) 1533 WP_264244481.1 aspartate aminotransferase family protein -
  N8E87_RS10060 (N8E87_10060) - 2064863..2066227 (-) 1365 WP_115248965.1 diaminobutyrate--2-oxoglutarate transaminase -
  N8E87_RS10065 (N8E87_10065) - 2066596..2067033 (-) 438 WP_264244484.1 hypothetical protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55894.41 Da        Isoelectric Point: 9.9640

>NTDB_id=733507 N8E87_RS10050 WP_035686457.1 2061608..2063143(+) (comM) [Avibacterium paragallinarum strain AP-2]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNANFKYPAKRITVNLAPADLPKDGGR
FDLPIAIGILAASDQVNPQALKQFELLGELALTGHLRGVHGIIPAILAARKVKRRTIIAKSNANEAALVADQESYIAQNL
LEVVQFLNDTLKLPLASDFTTPSAVDFSCKNPQDLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTTLLP
EMTEQEAIETASITSLVQNELNFHNWKQRPFRSPHHSASLPALVGGGTIPRPGEISLAHNGVLFLDELPEFDRKVLDALR
QPLESGEIIISRANAKICFPARFQLIAAMNPSPTGHYTGVHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPKGTLQQ
IENKGETSEQVRAKILQVREQQFARAGKINAHLTSKEIARDCAISAQDGAFLENTLTQLGLSVRAYHRILKVARTIADLN
NEAQIQRPHLAEALSYRAMDRLLQKLSRNLG

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=733507 N8E87_RS10050 WP_035686457.1 2061608..2063143(+) (comM) [Avibacterium paragallinarum strain AP-2]
ATGTCATTAGCTATCGTTTACAGTCGTGCGTCAATGGGGGTTCAAGCTCCCTTAGTTACCATTGAGGTGCATTTAAGCAA
TGGAAAGCCAGGTTTTACCCTTGTGGGATTACCAGAAAAAACGGTGAAAGAAGCACAAGATCGCGTGCGAAGTGCGTTAT
TAAATGCCAATTTCAAATATCCTGCCAAGCGAATTACCGTGAATCTTGCCCCTGCGGATTTACCTAAGGACGGTGGACGG
TTTGATTTGCCCATTGCAATTGGCATTTTAGCCGCTTCCGATCAAGTAAATCCTCAAGCACTCAAACAATTTGAGTTATT
AGGCGAGTTGGCTTTAACGGGACATCTGCGTGGCGTACACGGCATTATTCCTGCGATTTTAGCTGCAAGAAAGGTAAAGC
GTCGTACCATAATTGCGAAATCCAACGCGAATGAAGCCGCCCTAGTCGCTGATCAAGAGAGTTACATCGCTCAAAATTTG
CTTGAAGTGGTACAGTTTCTTAATGATACATTAAAACTCCCCCTTGCCTCAGATTTCACGACACCAAGTGCGGTAGATTT
TTCTTGCAAAAATCCCCAAGATCTCACAGATATTATCGGACAACAGCACGCTAAACGAGCCTTAACCATTGCCGCAGCAG
GGCAACATAATTTGCTCCTACTCGGCCCACCTGGCACGGGCAAAACAATGCTCGCCAGCCGTTTAACCACGCTGTTGCCT
GAGATGACGGAACAAGAAGCCATTGAAACCGCTTCCATAACTAGTTTAGTGCAAAATGAGCTGAATTTTCATAACTGGAA
ACAACGCCCTTTCCGTTCGCCACACCATAGTGCCTCCTTACCTGCTTTGGTGGGTGGGGGAACAATCCCAAGACCAGGCG
AAATTTCCCTAGCACATAATGGCGTACTATTTTTAGATGAACTGCCCGAATTTGATCGCAAAGTGCTTGACGCATTACGT
CAGCCGTTAGAAAGTGGGGAAATTATTATTTCGCGTGCCAATGCAAAAATTTGTTTTCCCGCTAGATTTCAGCTTATTGC
CGCAATGAACCCTAGCCCCACAGGGCATTACACGGGCGTACATAATCGCACCTCCCCCCAGCAGGTAATGCGTTATTTAA
ATCGCCTTTCGGGACCATTTTTAGATCGCTTTGATTTATCCATTGAAGTACCATTGCTTCCCAAAGGCACGCTACAACAA
ATTGAAAATAAAGGGGAAACCAGCGAACAGGTGAGAGCAAAGATTTTACAGGTTCGTGAACAACAATTCGCTCGTGCAGG
AAAAATTAACGCCCATCTCACCAGTAAAGAAATCGCACGGGATTGTGCAATCTCCGCACAAGATGGGGCTTTTTTAGAAA
ACACCTTAACCCAATTAGGGCTTTCAGTGCGTGCTTACCACCGCATTTTAAAAGTCGCACGCACCATCGCCGATCTAAAT
AATGAAGCACAAATTCAACGCCCCCACTTAGCCGAAGCCCTCTCTTATCGAGCAATGGATCGACTACTACAAAAGCTATC
TCGTAATCTAGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

82.643

99.217

0.82
  comM Glaesserella parasuis strain SC1401

75.345

99.217

0.748
  comM Vibrio cholerae strain A1552

65.286

99.217

0.648
  comM Vibrio campbellii strain DS40M4

63.708

99.217

0.632
  comM Legionella pneumophila str. Paris

50.299

98.043

0.493
  comM Legionella pneumophila strain ERS1305867

50.299

98.043

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.484

100

0.466