NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	N7761_RS04830	Genome accession	NZ_CP104882
Coordinates	951587..952291 (-)	Length	234 a.a.
NCBI ID	WP_014167482.1	Uniprot ID	-
Organism	Aggregatibacter actinomycetemcomitans strain IDHaas10a
Function	require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 946587..957291

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7761_RS04810 (N7761_04810)	-	946636..947319 (-)	684	WP_005567036.1	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	-
N7761_RS04815 (N7761_04815)	-	947625..949283 (+)	1659	WP_005571009.1	phospho-sugar mutase	-
N7761_RS04820 (N7761_04820)	envC	949492..950751 (+)	1260	WP_005571010.1	murein hydrolase activator EnvC	-
N7761_RS04825 (N7761_04825)	-	950757..951575 (+)	819	WP_390883557.1	divergent polysaccharide deacetylase family protein	-
N7761_RS04830 (N7761_04830)	comM	951587..952291 (-)	705	WP_014167482.1	ATP-binding protein	Machinery gene
N7761_RS04835 (N7761_04835)	-	952427..953089 (+)	663	WP_005559213.1	heteromeric transposase endonuclease subunit TnsA	-
N7761_RS04840 (N7761_04840)	-	953082..955001 (+)	1920	WP_005559215.1	Mu transposase C-terminal domain-containing protein	-
N7761_RS04845 (N7761_04845)	-	955001..955894 (+)	894	WP_005541478.1	TniB family NTP-binding protein	-
N7761_RS04850 (N7761_04850)	-	955852..956970 (+)	1119	WP_005548211.1	TniQ family protein	-

Sequence

Protein

Download Length: 234 a.a. Molecular weight: 26130.98 Da Isoelectric Point: 9.4430

                                >NTDB_id=733187 N7761_RS04830 WP_014167482.1 951587..952291(-) (comM) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]

MPLICNFDSGTIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPAKFQLIAAMNPSPTGHY

QGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQNSGDRGESSATVREKVLKTRAIQLQRAGKINAHLNSKE

IERDCKLTDKDAQFLENALTKLGLSVRAYHRILKVSRTIADLDGEQHINQCHLAEALGYRAMDRLLQKLAKNSA

Nucleotide

Download Length: 705 bp

                                >NTDB_id=733187 N7761_RS04830 WP_014167482.1 951587..952291(-) (comM) [Aggregatibacter actinomycetemcomitans strain IDHaas10a]

ATGCCACTTATTTGTAACTTTGACAGCGGCACGATCCCCAAACCGGGCGAAATTTCCCTCGCTCACAATGGCGTGCTTTT

CTTAGATGAGTTGCCCGAATTTGAACGCAAAGTGCTGGACGCGCTGCGTCAACCATTGGAAAGTGGCGAAATTATTATTT

CCCGCGCCAACGCCAAGATTCAATTTCCGGCAAAATTTCAACTGATTGCCGCGATGAATCCCAGCCCGACAGGGCATTAT

CAAGGCACGCATAATCGCACCTCACCACAACAAGTTATGCGTTATCTGAATCGGTTATCCGGCCCTTTTTTAGATCGCTT

CGATTTATCCATTGAAGTGCCCTTATTACCACAAGGCAGCTTACAAAATAGCGGCGATCGTGGCGAATCCAGCGCAACGG

TGAGAGAAAAAGTCCTGAAAACCCGTGCCATTCAACTTCAGCGCGCCGGCAAAATTAATGCCCATTTAAATAGCAAAGAA

ATCGAACGGGACTGCAAACTAACCGACAAAGACGCACAGTTCCTGGAAAATGCCCTGACTAAACTGGGGCTTTCCGTACG

AGCGTACCACCGCATACTGAAAGTGTCCCGCACCATTGCCGATTTAGATGGAGAACAACACATCAACCAGTGCCATCTGG

CCGAAGCTCTGGGTTATCGGGCAATGGACAGGTTGTTGCAAAAATTGGCGAAAAACTCGGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-220)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-118)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Haemophilus influenzae Rd KW20	86.957	98.291	0.855
comM	Glaesserella parasuis strain SC1401	81.034	99.145	0.803
comM	Vibrio cholerae strain A1552	67.873	94.444	0.641
comM	Vibrio campbellii strain DS40M4	65.909	94.017	0.62
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	52	96.154	0.5
comM	Legionella pneumophila str. Paris	51.869	91.453	0.474
comM	Legionella pneumophila strain ERS1305867	51.869	91.453	0.474

Detailed information NTG0733187