Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N7S94_RS14960 Genome accession   NZ_CP104836
Coordinates   3049677..3051200 (-) Length   507 a.a.
NCBI ID   WP_261658708.1    Uniprot ID   -
Organism   Enterobacter cloacae strain 2022CK-00409     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3044677..3056200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7S94_RS14945 (N7S94_14940) hdfR 3046449..3047270 (-) 822 WP_020685959.1 HTH-type transcriptional regulator HdfR -
  N7S94_RS14950 (N7S94_14945) - 3047389..3047727 (+) 339 WP_013099290.1 DUF413 domain-containing protein -
  N7S94_RS14955 (N7S94_14950) ltrA 3048193..3049614 (+) 1422 WP_047352390.1 group II intron reverse transcriptase/maturase -
  N7S94_RS14960 (N7S94_14955) comM 3049677..3051200 (-) 1524 WP_261658708.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N7S94_RS14965 (N7S94_14960) ilvL 3051543..3051641 (+) 99 WP_023620831.1 ilv operon leader peptide -
  N7S94_RS14970 (N7S94_14965) ilvX 3051728..3051778 (+) 51 WP_102046757.1 peptide IlvX -
  N7S94_RS14975 (N7S94_14970) ilvG 3051781..3053427 (+) 1647 WP_023620832.1 acetolactate synthase 2 catalytic subunit -
  N7S94_RS14980 (N7S94_14975) ilvM 3053424..3053687 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  N7S94_RS14985 (N7S94_14980) ilvE 3053706..3054635 (+) 930 WP_013099287.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55111.06 Da        Isoelectric Point: 6.8867

>NTDB_id=732554 N7S94_RS14960 WP_261658708.1 3049677..3051200(-) (comM) [Enterobacter cloacae strain 2022CK-00409]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTARLGSYEFIGELALTGALRGVPGAISGALEAIHAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAHLEGQHTLSEPEETGDILPESPDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQTTIRG
ESTAKVRERVIASQARQYARQHKLNARLDNAEIRQFCHLKAEDACWLEETLTRFGLSIRAWQRLLKVARTIADVEGDPEI
ERHHLQEALSYRAIDRLLLHLQKLLIE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=732554 N7S94_RS14960 WP_261658708.1 3049677..3051200(-) (comM) [Enterobacter cloacae strain 2022CK-00409]
ATGTCACTGTCAGTTGTTTACACGCGCGCGGCTATCGGAGTAAAGGCACCGCTTATTTCTGTGGAGGTTCATCTGAGTAA
TGGGCTCCCTGGGCTAACGCTTGTCGGCTTGCCAGAAACCACGGTCAAAGAAGCCAGAGATCGGGTTCGCAGCGCAATTA
TCAATAGCGGTTATACCTTCCCCGCCAAGAAGATCACGATCAACCTTGCTCCCGCAGATCTGCCCAAGGAGGGCGGACGA
TACGATTTACCTATCGCTATTGCGCTTCTCGCAGCCTCTGAGCAGCTCAACACTGCGAGGCTAGGCTCGTACGAGTTCAT
TGGCGAACTGGCGCTTACAGGCGCGTTAAGAGGCGTTCCTGGCGCCATCTCTGGTGCGCTGGAAGCCATTCATGCCGGTC
GACAAATTATTGTAGCCAATGAAAATGCCTCAGAAGTGAGCCTGATTGCCGAGAAAGGATGCCTGGTCGCGGGGCATTTA
CAGGAAGTCTGCGCGCACCTTGAAGGCCAACATACGCTCTCCGAGCCAGAGGAAACCGGAGATATCCTGCCTGAAAGCCC
GGACGACCTCAGCGATATTATCGGGCAGGAGCAGGGGAAGCGGGCACTGGAGATCACCGCAGCCGGAGGACATAACCTGT
TGCTGATTGGCCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCAGGCTGAACGGGTTATTGCCACCACTCAATAATCAT
GAGGCACTTGAAAGCGCAGCGATATTTAGCCTGGTGAGCTCTGCATCATTGCAAAAACAGTGGCGACGACGCCCTTTTCG
CTCTCCCCATCACAGTGCCTCCCTGACGGCCATGGTCGGAGGGGGCTCCATTCCGGGGCCGGGAGAGATCTCGCTGGCAC
ACAATGGCATCCTGTTCCTTGATGAACTGCCTGAGTTTGAACGCCGCGTACTGGATGCCCTGCGGGAACCTATCGAATCT
GGCGAGATCCATATCTCCCGCACGCGCGCCAAAATAAGCTACCCGGCACAGTTCCAGCTGGTTGCCGCCATGAACCCCAG
CCCATCAGGCCATTATCAGGGAAATCATAATCGCTGCACGCCTGAGCAGACGCTGCGCTATCTGGGGAAGCTGTCAGGCC
CTTTCCTCGATCGTTTTGATTTATCCCTGGAGATCCCATTACCGCCCCCTGGTTTGCTCAGCCAGACAACGATACGCGGT
GAGAGCACAGCGAAGGTTCGCGAACGGGTTATCGCCTCACAGGCCCGACAGTACGCTCGTCAACATAAGCTGAATGCGCG
TCTGGATAATGCTGAGATTCGGCAGTTTTGCCATCTTAAGGCTGAGGATGCCTGCTGGCTTGAAGAGACATTGACGCGAT
TTGGGCTCTCGATCCGTGCATGGCAGCGCCTGCTGAAAGTGGCTCGCACTATTGCCGATGTGGAAGGAGACCCAGAGATT
GAAAGACACCATCTGCAGGAAGCGCTGAGCTATCGCGCCATAGATCGGTTGTTGCTGCACTTGCAAAAATTACTGATCGA
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.984

100

0.596
  comM Vibrio cholerae strain A1552

59.96

99.014

0.594
  comM Vibrio campbellii strain DS40M4

59.722

99.408

0.594
  comM Glaesserella parasuis strain SC1401

58.974

100

0.59
  comM Legionella pneumophila str. Paris

50.302

98.028

0.493
  comM Legionella pneumophila strain ERS1305867

50.302

98.028

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.44