Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N7S94_RS12645 Genome accession   NZ_CP104836
Coordinates   2555788..2556312 (-) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter cloacae strain 2022CK-00409     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2553923..2554903 2555788..2556312 flank 885


Gene organization within MGE regions


Location: 2553923..2556312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7S94_RS12635 (N7S94_12630) - 2553923..2554903 (+) 981 WP_000019450.1 IS5-like element ISKpn26 family transposase -
  N7S94_RS12640 (N7S94_12635) - 2555444..2555725 (+) 282 WP_008503385.1 YjcB family protein -
  N7S94_RS12645 (N7S94_12640) ssb 2555788..2556312 (-) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=732549 N7S94_RS12645 WP_003860284.1 2555788..2556312(-) (ssb) [Enterobacter cloacae strain 2022CK-00409]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=732549 N7S94_RS12645 WP_003860284.1 2555788..2556312(-) (ssb) [Enterobacter cloacae strain 2022CK-00409]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCAACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCAGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAGTACACCACTGAAGTGGTGGTAAACGTAGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCCGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374