Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   N7K38_RS15415 Genome accession   NZ_CP104762
Coordinates   3057816..3059582 (-) Length   588 a.a.
NCBI ID   WP_010745128.1    Uniprot ID   R2RRM0
Organism   Enterococcus raffinosus strain ATCC 49464     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3052816..3064582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7K38_RS15410 (N7K38_15410) rcrQ 3056039..3057823 (-) 1785 WP_010745129.1 ABC transporter ATP-binding protein Regulator
  N7K38_RS15415 (N7K38_15415) rcrP 3057816..3059582 (-) 1767 WP_010745128.1 ABC transporter ATP-binding protein Regulator
  N7K38_RS15420 (N7K38_15420) - 3059684..3060112 (-) 429 WP_010745127.1 MarR family winged helix-turn-helix transcriptional regulator -
  N7K38_RS15425 (N7K38_15425) - 3060172..3060507 (-) 336 WP_010745126.1 hypothetical protein -
  N7K38_RS15430 (N7K38_15430) - 3060652..3062031 (-) 1380 WP_010745125.1 MATE family efflux transporter -
  N7K38_RS15435 (N7K38_15435) - 3062035..3062469 (-) 435 WP_010745124.1 MarR family winged helix-turn-helix transcriptional regulator -
  N7K38_RS15440 (N7K38_15440) - 3062603..3063202 (-) 600 WP_010745123.1 YitT family protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65057.23 Da        Isoelectric Point: 5.4009

>NTDB_id=732128 N7K38_RS15415 WP_010745128.1 3057816..3059582(-) (rcrP) [Enterococcus raffinosus strain ATCC 49464]
MIQLIKRTNAKERLLVLASVLFIVGQVWMDLKVPDYMSQITTLLQTPNTAISEILKPGGWMILLSLMSFVFSSIVGLFAA
KLAASLTCRLRQEMFGQVMDYSTYEIQQFSIPSLTTRTTNDLTQIQQVVAMGLQVMIKGPITAVWAVLKIAGKNWQWTTT
TGVAVLILLIMLSIVLTLVQPRFAKVQQLTDKVNSITRENLTGLRVVRAYNAEDYQEEKFEKANQDLTATNLFAGRVMAL
LSPGMSLISGGLTLAVYWIGAYMIQQAQGGLKLSLFSDMIVFSSYAMQVVMSFVLMSMIFMILPRATVSARRINEVLTKE
SSVEFPTEGEKTQPEIKGTVEFDHVSFSYPDASEPVIHDISFKADQGDTVAFIGSTGSGKSTILNLIPRFYETTEGNISI
DGQPINTYSHVNLNDIVGYIPQKPILFSGTIQSNLDFGTSGNQPLNEEKMQEALSIAQASEFVNEKEGKLKSPVAQNGSN
FSGGQKQRLAIARVIARQPEILLFDDSFSALDYKTDKKLRQVLKEKLADTTKLIVAQRISTIMDADQILVLDEGRIVGQG
THDELLATNSVYQEIAYSQLSKEELVNG

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=732128 N7K38_RS15415 WP_010745128.1 3057816..3059582(-) (rcrP) [Enterococcus raffinosus strain ATCC 49464]
ATGATACAACTAATAAAACGAACCAACGCAAAAGAACGATTGCTGGTATTAGCCAGTGTACTATTTATCGTCGGACAAGT
CTGGATGGATTTGAAGGTCCCGGATTATATGTCGCAAATCACCACCTTATTGCAAACGCCTAACACCGCCATCAGTGAAA
TTTTGAAACCGGGCGGCTGGATGATTTTACTTTCTCTAATGAGCTTTGTTTTTTCTTCTATTGTCGGTTTATTCGCCGCG
AAGCTAGCCGCGAGCTTAACTTGCCGCCTACGTCAAGAGATGTTTGGACAAGTAATGGATTATTCCACGTATGAGATTCA
GCAATTCTCGATCCCCAGTTTAACGACTCGGACAACCAATGATTTAACGCAAATTCAACAGGTAGTCGCGATGGGGCTGC
AAGTAATGATCAAAGGACCTATCACGGCGGTCTGGGCGGTATTGAAAATTGCCGGAAAAAATTGGCAGTGGACCACTACG
ACAGGAGTTGCTGTTTTGATCCTATTGATTATGCTATCGATCGTTTTGACACTAGTGCAGCCGCGCTTTGCAAAAGTGCA
GCAATTAACCGATAAAGTTAACAGTATTACACGGGAAAATCTAACGGGTCTGCGAGTGGTCCGAGCATATAACGCAGAAG
ACTATCAAGAAGAGAAATTCGAGAAGGCCAATCAAGATCTCACAGCAACGAATTTATTCGCGGGTCGCGTAATGGCATTG
CTGAGTCCGGGAATGAGCCTGATTTCAGGCGGACTGACACTAGCGGTCTATTGGATCGGTGCTTACATGATTCAACAAGC
GCAAGGGGGACTAAAGCTTTCCTTGTTCAGTGATATGATCGTCTTTTCTTCTTATGCGATGCAGGTAGTAATGAGCTTTG
TTTTAATGTCGATGATTTTTATGATCTTACCTCGAGCGACCGTATCCGCTAGACGGATCAACGAAGTTTTAACGAAAGAA
TCCTCCGTTGAATTTCCAACGGAAGGCGAGAAAACACAACCGGAGATCAAAGGAACCGTAGAATTCGATCATGTATCATT
CAGCTATCCGGATGCTTCTGAACCTGTGATTCATGACATCAGCTTTAAGGCCGATCAGGGGGATACAGTTGCCTTTATCG
GTTCGACCGGCAGCGGAAAAAGTACAATCCTGAATTTGATTCCTCGCTTTTATGAAACAACCGAAGGAAATATTTCAATT
GATGGACAGCCGATCAATACGTATAGTCACGTGAATTTAAATGATATTGTCGGCTACATTCCCCAAAAGCCAATTTTATT
TAGCGGAACGATCCAGTCGAATCTTGATTTTGGAACCAGCGGTAATCAGCCGCTGAATGAAGAAAAAATGCAGGAAGCCT
TGTCCATTGCACAGGCTAGTGAATTTGTGAATGAAAAAGAGGGCAAGCTGAAGAGTCCGGTCGCTCAAAACGGCAGCAAT
TTCTCCGGTGGACAGAAGCAGCGTCTAGCAATTGCTCGTGTGATCGCAAGACAGCCAGAAATTCTATTATTCGATGATTC
CTTTTCTGCGCTAGATTACAAAACGGATAAAAAATTACGACAGGTACTAAAAGAAAAATTAGCTGATACGACAAAACTGA
TTGTTGCTCAACGAATCAGTACGATCATGGATGCGGATCAGATCCTTGTTTTGGATGAAGGACGAATCGTCGGACAAGGA
ACCCACGACGAATTATTGGCGACCAACTCCGTCTATCAAGAGATTGCGTATTCACAGCTGTCGAAGGAGGAATTAGTTAA
TGGATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R2RRM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

60.333

100

0.616