Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   N7K38_RS15410 Genome accession   NZ_CP104762
Coordinates   3056039..3057823 (-) Length   594 a.a.
NCBI ID   WP_010745129.1    Uniprot ID   R2R4L5
Organism   Enterococcus raffinosus strain ATCC 49464     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3051039..3062823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7K38_RS15405 (N7K38_15405) - 3051507..3055379 (-) 3873 WP_167325161.1 VWA domain-containing protein -
  N7K38_RS15410 (N7K38_15410) rcrQ 3056039..3057823 (-) 1785 WP_010745129.1 ABC transporter ATP-binding protein Regulator
  N7K38_RS15415 (N7K38_15415) rcrP 3057816..3059582 (-) 1767 WP_010745128.1 ABC transporter ATP-binding protein Regulator
  N7K38_RS15420 (N7K38_15420) - 3059684..3060112 (-) 429 WP_010745127.1 MarR family winged helix-turn-helix transcriptional regulator -
  N7K38_RS15425 (N7K38_15425) - 3060172..3060507 (-) 336 WP_010745126.1 hypothetical protein -
  N7K38_RS15430 (N7K38_15430) - 3060652..3062031 (-) 1380 WP_010745125.1 MATE family efflux transporter -
  N7K38_RS15435 (N7K38_15435) - 3062035..3062469 (-) 435 WP_010745124.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 66341.28 Da        Isoelectric Point: 5.2354

>NTDB_id=732127 N7K38_RS15410 WP_010745129.1 3056039..3057823(-) (rcrQ) [Enterococcus raffinosus strain ATCC 49464]
MDNTLENIQTQPKAHPLRKNILNALNQYKWPLILAIIFATIGSITQIVGPNRLSEITDLITQGLRGSINLTQISHIGLSL
VLLYVIGAVLSYFQGFIVATVTQRFSKQMRRQISEKINAVPLNYFDSHSQGDTLSRVTNDLDTVSQSLNQSLSSLFPSIT
LFIGCLIMMFRTNLILTITSVISVLLGFLFMAVIMAKSQVHFNQQQEKLANISGFAEEAYSGQQVINAYSAAEDMKTEFG
EMNQDFYGSVWKAQFLSGIMQPLMGFIGNFGYVAVCVVGAVLALRGDITLGVIVAFTVYIRLFSQPLSQLAQAFSNLQSA
AAAMNRVFEFLAEEELADESEKITKLRKPEGNIRFENVSFGYEKERTIIHHFSVEAKAGQKIAIVGPTGAGKTTIVNLLM
RFYETNHGEIIIDGVSTKDMTREEVHDQFCMVLQDTWLFEGTIKENLIYNQQHVTDEAVVKACKAVGIDHFIRTLPKGYD
TYLDDSVSLSVGQKQLLTIARAIIKDAPMLILDEATSSVDTRTEELIQAAMDQLMNNRTSFVIAHRLSTIRNADLILVMK
EGNIIEQGNHQELMDEQGFYADLYNSQFEKEQLV

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=732127 N7K38_RS15410 WP_010745129.1 3056039..3057823(-) (rcrQ) [Enterococcus raffinosus strain ATCC 49464]
ATGGATAATACATTGGAAAATATTCAAACACAACCAAAGGCACATCCTTTGCGCAAAAATATTTTAAACGCGTTGAATCA
ATACAAATGGCCGCTGATTTTAGCGATCATCTTTGCAACGATCGGGAGTATCACACAAATCGTCGGACCGAATCGATTAA
GTGAAATTACAGATTTGATTACTCAAGGCCTGCGAGGATCGATCAATCTCACACAAATCAGCCACATTGGCTTAAGTTTA
GTTCTATTATATGTAATCGGTGCGGTTCTCTCTTATTTTCAAGGCTTCATCGTAGCGACAGTAACACAACGCTTTTCAAA
ACAAATGCGTCGTCAGATATCGGAAAAGATTAATGCTGTGCCGTTGAATTATTTTGATTCTCACAGTCAGGGGGATACCT
TGAGTCGTGTGACCAATGACCTAGATACAGTGAGCCAATCCTTGAATCAAAGCTTGAGCTCCTTGTTTCCATCAATCACG
CTTTTTATCGGTTGTCTGATCATGATGTTTCGAACAAATCTTATATTAACAATCACCTCAGTCATTTCTGTTCTATTAGG
CTTTTTATTCATGGCGGTCATTATGGCTAAATCCCAAGTCCATTTTAATCAGCAACAGGAAAAGCTTGCGAATATCAGCG
GCTTTGCTGAAGAGGCGTATTCTGGACAACAGGTCATTAATGCATACAGTGCCGCAGAGGATATGAAGACTGAGTTTGGT
GAGATGAATCAGGATTTTTATGGCAGTGTGTGGAAGGCACAATTCTTATCTGGGATCATGCAGCCGTTAATGGGCTTTAT
CGGAAATTTTGGGTATGTTGCAGTCTGCGTAGTTGGCGCTGTTTTAGCTCTGAGAGGCGACATCACTCTTGGAGTGATCG
TCGCGTTTACTGTCTATATCCGCTTGTTTTCACAGCCGCTATCACAGTTGGCGCAAGCTTTTTCGAATCTGCAGTCGGCG
GCAGCGGCAATGAATCGTGTGTTTGAATTTTTAGCCGAAGAGGAATTGGCTGATGAATCAGAAAAAATAACCAAATTACG
GAAGCCGGAAGGCAATATTCGCTTCGAGAATGTCAGCTTTGGCTATGAAAAAGAACGAACGATCATTCATCATTTCAGTG
TCGAAGCGAAGGCGGGTCAAAAAATCGCGATTGTTGGTCCAACTGGAGCAGGGAAGACAACGATCGTTAATCTGCTGATG
CGCTTTTACGAAACCAATCATGGAGAGATTATAATTGATGGTGTGTCCACAAAGGATATGACGCGAGAAGAGGTCCACGA
CCAATTTTGTATGGTATTGCAGGATACTTGGCTATTTGAAGGAACGATCAAAGAAAATCTGATTTACAATCAGCAGCATG
TTACCGACGAAGCGGTGGTAAAGGCGTGTAAAGCAGTAGGGATTGATCACTTTATCCGAACACTGCCGAAGGGCTATGAT
ACTTATCTAGATGATAGTGTGAGCTTATCTGTTGGACAAAAACAATTATTGACGATTGCTCGTGCGATCATAAAAGACGC
ACCGATGCTGATTCTAGATGAGGCCACTAGTTCTGTGGATACCCGAACAGAGGAGTTGATTCAAGCAGCGATGGATCAAT
TAATGAATAATCGAACTTCCTTCGTCATCGCTCATCGACTATCCACCATTCGAAATGCGGATCTGATTTTAGTCATGAAA
GAAGGAAACATTATCGAGCAAGGGAACCATCAAGAGCTGATGGATGAACAAGGCTTTTACGCTGACCTATACAATAGTCA
GTTTGAGAAAGAACAGCTTGTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-517)

ABC transporter transmembrane region (ABC_membrane)

(32-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R2R4L5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

63.511

97.811

0.621