Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5580_RS16810 Genome accession   NZ_CP104758
Coordinates   3536865..3537413 (-) Length   182 a.a.
NCBI ID   WP_120455175.1    Uniprot ID   -
Organism   Pantoea piersonii strain GABEKP28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3531865..3542413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5580_RS16785 (N5580_16785) - 3532957..3533352 (+) 396 WP_120455182.1 transposase -
  N5580_RS16790 (N5580_16790) - 3533927..3534172 (+) 246 WP_269949602.1 hypothetical protein -
  N5580_RS16795 (N5580_16795) - 3534279..3535238 (-) 960 WP_269949603.1 DMT family transporter -
  N5580_RS16800 (N5580_16800) - 3535319..3536146 (-) 828 WP_269949604.1 AraC family transcriptional regulator -
  N5580_RS16805 (N5580_16805) - 3536270..3536793 (+) 524 Protein_3282 isochorismatase family protein -
  N5580_RS16810 (N5580_16810) ssb 3536865..3537413 (-) 549 WP_120455175.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N5580_RS16815 (N5580_16815) uvrA 3537639..3540467 (+) 2829 WP_120455173.1 excinuclease ABC subunit UvrA -
  N5580_RS16820 (N5580_16820) - 3540731..3541795 (+) 1065 WP_120455171.1 NAD(P)-dependent alcohol dehydrogenase -
  N5580_RS16825 (N5580_16825) - 3541834..3542169 (-) 336 WP_120455169.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19401.34 Da        Isoelectric Point: 5.2358

>NTDB_id=732080 N5580_RS16810 WP_120455175.1 3536865..3537413(-) (ssb) [Pantoea piersonii strain GABEKP28]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVNVGGTMQMLGGRQQGAGAGGAPMGGGQGGGNNNGWGQPQQPQGGNQFSGGAQSRPQ
PQSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=732080 N5580_RS16810 WP_120455175.1 3536865..3537413(-) (ssb) [Pantoea piersonii strain GABEKP28]
ATGGCCAGTCGTGGCGTAAATAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTGCGCTACATGCCGAATGG
TGGCGCGGTTGCCAACATTACGCTGGCCACGTCGGAAAGCTGGCGTGACAAGCAGACCGGTGAAAATAAAGAGATCACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAGCTGGCGGAAGTCGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGCACCCGCAAATGGCAGGACCAGGGCGGCCAGGATCGCTATACCACGGAAGTCGTGGTCAACGTCGG
CGGCACCATGCAGATGCTGGGCGGACGTCAGCAGGGCGCTGGCGCTGGCGGCGCGCCGATGGGCGGCGGTCAGGGCGGCG
GCAACAATAACGGCTGGGGTCAGCCACAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCTCAG
CCGCAGAGCGCCCCGGCGAGCAACAACAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.826

100

0.736
  ssb Glaesserella parasuis strain SC1401

58.289

100

0.599
  ssb Neisseria meningitidis MC58

46.196

100

0.467
  ssb Neisseria gonorrhoeae MS11

46.196

100

0.467
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.778

98.901

0.374