Detailed information NTG0731847

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: N7J24_RS01140
• Genome accession: NZ_CP104749
• Coordinates: 191472..191885 (+)
• Length: 137 a.a.
• NCBI ID: WP_000244259.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain TAH 10/84 dUdp
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 186472..196885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7J24_RS01120 (N7J24_01120)	-	188726..189091 (+)	366	WP_000285373.1	DUF1033 family protein	-
N7J24_RS01125 (N7J24_01125)	comYA	189263..190234 (+)	972	WP_000250801.1	competence type IV pilus ATPase ComGA	Machinery gene
N7J24_RS01130 (N7J24_01130)	comYB	190128..191171 (+)	1044	WP_228313184.1	competence type IV pilus assembly protein ComGB	Machinery gene
N7J24_RS01135 (N7J24_01135)	comGC/cglC	191168..191497 (+)	330	WP_000793380.1	competence type IV pilus major pilin ComGC	Machinery gene
N7J24_RS01140 (N7J24_01140)	comYD	191472..191885 (+)	414	WP_000244259.1	competence type IV pilus minor pilin ComGD	Machinery gene
N7J24_RS01145 (N7J24_01145)	comGE	191857..192156 (+)	300	WP_038406052.1	competence type IV pilus minor pilin ComGE	-
N7J24_RS01150 (N7J24_01150)	comGF	192110..192571 (+)	462	WP_001874060.1	competence type IV pilus minor pilin ComGF	-
N7J24_RS01155 (N7J24_01155)	comGG	192549..192920 (+)	372	WP_000601105.1	competence type IV pilus minor pilin ComGG	-
N7J24_RS01160 (N7J24_01160)	comYH	193035..194009 (+)	975	WP_001008567.1	class I SAM-dependent methyltransferase	Machinery gene
N7J24_RS01165 (N7J24_01165)	-	194041..195234 (+)	1194	WP_000047534.1	acetate kinase	-
N7J24_RS01170 (N7J24_01170)	-	195362..195554 (+)	193	Protein_173	helix-turn-helix transcriptional regulator	-
N7J24_RS01175 (N7J24_01175)	-	195533..195799 (+)	267	Protein_174	hypothetical protein	-
N7J24_RS01180 (N7J24_01180)	-	195868..196533 (+)	666	WP_000008107.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15938.41 Da
• Isoelectric Point: 9.9787

>NTDB_id=731847 N7J24_RS01140 WP_000244259.1 191472..191885(+) (comYD) [Streptococcus agalactiae strain TAH 10/84 dUdp]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide

• Length: 414 bp

>NTDB_id=731847 N7J24_RS01140 WP_000244259.1 191472..191885(+) (comYD) [Streptococcus agalactiae strain TAH 10/84 dUdp]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGATACACTTGCATTTGACGCTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAACTATCGTA
AGAAAGAAAATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	51.515	96.35	0.496
comYD	Streptococcus mutans UA159	51.515	96.35	0.496
comYD	Streptococcus gordonii str. Challis substr. CH1	47.407	98.54	0.467
comGD/cglD	Streptococcus mitis NCTC 12261	41.045	97.81	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	43.307	92.701	0.401
comGD/cglD	Streptococcus mitis SK321	43.307	92.701	0.401
comGD/cglD	Streptococcus pneumoniae Rx1	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae D39	42.52	92.701	0.394
comGD/cglD	Streptococcus pneumoniae R6	42.52	92.701	0.394