Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   K6J79_RS08435 Genome accession   NZ_AP024555
Coordinates   1805170..1806174 (+) Length   334 a.a.
NCBI ID   WP_000568491.1    Uniprot ID   Q9KR02
Organism   Vibrio cholerae strain IDH-03506     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1800170..1811174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J79_RS08410 lpxH 1800994..1801734 (-) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  K6J79_RS08415 - 1801775..1802269 (-) 495 WP_000631302.1 peptidylprolyl isomerase -
  K6J79_RS08420 cysS 1802415..1803794 (+) 1380 WP_000913180.1 cysteine--tRNA ligase -
  K6J79_RS08425 ruvC 1803882..1804403 (+) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  K6J79_RS08430 ruvA 1804500..1805114 (+) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J79_RS08435 ruvB 1805170..1806174 (+) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J79_RS08440 cydA 1806633..1808219 (+) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  K6J79_RS08445 cydB 1808237..1809373 (+) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  K6J79_RS08450 cydX 1809386..1809493 (+) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  K6J79_RS08455 ybgE 1809486..1809803 (+) 318 WP_001286617.1 cyd operon protein YbgE -
  K6J79_RS08460 ybgC 1809972..1810379 (+) 408 WP_001091290.1 tol-pal system-associated acyl-CoA thioesterase -
  K6J79_RS08465 tolQ 1810369..1811052 (+) 684 WP_000123084.1 protein TolQ -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37298.75 Da        Isoelectric Point: 5.0460

>NTDB_id=73178 K6J79_RS08435 WP_000568491.1 1805170..1806174(+) (ruvB) [Vibrio cholerae strain IDH-03506]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=73178 K6J79_RS08435 WP_000568491.1 1805170..1806174(+) (ruvB) [Vibrio cholerae strain IDH-03506]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTCTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCACAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(25-183)

RuvB C-terminal winged helix domain (WHD_RuvB)

(261-330)

RuvB AAA lid domain (AAA_lid_4)

(186-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.682

96.108

0.593
  ruvB Streptococcus pneumoniae TIGR4

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae R6

59.937

94.91

0.569
  ruvB Streptococcus pneumoniae D39

59.937

94.91

0.569
  ruvB Synechocystis sp. PCC 6803

55.663

92.515

0.515
  ruvB Helicobacter pylori 26695

54.276

91.018

0.494

Multiple sequence alignment