Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   N5P16_RS01035 Genome accession   NZ_CP104734
Coordinates   226362..227513 (+) Length   383 a.a.
NCBI ID   WP_004930462.1    Uniprot ID   Q6FFH8
Organism   Acinetobacter baylyi strain JAT2044     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 221362..232513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS16815 - 221723..221854 (-) 132 Protein_188 hypothetical protein -
  N5P16_RS01015 (N5P16_01015) - 221935..223923 (-) 1989 WP_004930454.1 TonB-dependent copper receptor -
  N5P16_RS01020 (N5P16_01020) - 224026..224457 (-) 432 WP_004930457.1 DUF2946 family protein -
  N5P16_RS01025 (N5P16_01025) def 224542..225066 (-) 525 WP_004930458.1 peptide deformylase -
  N5P16_RS01030 (N5P16_01030) tsaP 225187..226344 (+) 1158 WP_004930460.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  N5P16_RS01035 (N5P16_01035) dprA 226362..227513 (+) 1152 WP_004930462.1 DNA-processing protein DprA Machinery gene
  N5P16_RS01040 (N5P16_01040) - 227553..228125 (+) 573 WP_004930465.1 L-threonylcarbamoyladenylate synthase -
  N5P16_RS01045 (N5P16_01045) - 228661..229578 (-) 918 WP_004930467.1 ABC transporter permease -
  N5P16_RS01050 (N5P16_01050) - 229591..230697 (-) 1107 WP_004930471.1 ABC transporter permease -
  N5P16_RS01055 (N5P16_01055) - 230737..232296 (-) 1560 WP_011181993.1 ABC transporter ATP-binding protein -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 42513.12 Da        Isoelectric Point: 6.5346

>NTDB_id=731682 N5P16_RS01035 WP_004930462.1 226362..227513(+) (dprA) [Acinetobacter baylyi strain JAT2044]
MITILSSHHYHTIKVWYVLQHSLSGFKKLIHYFGDCETALQPQRLSDWQKLGLHANHLKRLEEVHTLQGQQQFEKMLAQL
QTHTDFIVTPDDPAYPSQLIPYQDRPPILFGQGSIQSLIQPQIAVVGSRKPSPHGRQVAYDFSYFLSEKGFYITSGLAHG
IDEAAHQGSLVHHRAIAVVGTGLDLCYPSGNKALKQHIRDQGGAIVSEFLPGTPPLQAHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKVVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTHWHSQSTASGEANADDSGKTD
DADLPDDLLPLYQLLDWQGQDLDQLAQHYQGSTAELTAQLMELELLGVCIQQSGRYLRCRSPY

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=731682 N5P16_RS01035 WP_004930462.1 226362..227513(+) (dprA) [Acinetobacter baylyi strain JAT2044]
ATGATTACAATACTTTCATCACATCACTACCACACCATCAAGGTGTGGTATGTATTACAGCATTCACTTTCAGGCTTCAA
AAAACTCATTCATTATTTTGGTGATTGTGAAACAGCACTACAACCCCAGCGTTTAAGTGACTGGCAAAAGCTCGGATTAC
ATGCCAATCATCTAAAGCGCCTAGAGGAAGTCCATACATTACAAGGACAGCAGCAATTCGAAAAGATGCTTGCTCAGCTT
CAAACCCATACCGATTTTATTGTGACACCCGATGATCCCGCTTATCCATCGCAGTTAATTCCCTATCAGGATCGCCCTCC
CATTCTATTTGGTCAAGGCTCAATACAAAGCCTGATCCAACCACAAATTGCAGTCGTGGGTAGTCGTAAACCCAGCCCTC
ATGGTCGACAGGTAGCATATGACTTTTCTTATTTTTTAAGTGAAAAAGGTTTTTATATTACCAGCGGTTTAGCCCATGGA
ATTGATGAAGCTGCACATCAGGGGAGTCTGGTACACCACCGCGCAATAGCTGTGGTCGGAACAGGGTTAGATCTATGCTA
TCCATCAGGCAATAAAGCCTTGAAACAGCACATACGAGATCAGGGTGGTGCGATCGTTAGTGAATTCTTGCCAGGAACAC
CACCTTTACAAGCCCATTTTCCGCGACGCAACCGTATCGTGAGTGGCTTAAGTCTAGGTGTTCTGGTGGTTGAAGCGACA
TTGAAAAGTGGCTCATTAATTACCGCCAATAAAGCGGCAGAACAAGGTAAAGTTGTTTTTGCGATTCCAGGCCATATTTA
TAGTGAGTTTCATCAAGGCTGCCATCAACTGATTCGCGAAGGTGCGATTTTAGTCGATCACCCCGAACAGATCATTGAAG
ACCTGGCACTTCCGACCCATTGGCATAGTCAGTCTACTGCATCGGGAGAAGCCAATGCCGATGATTCAGGCAAAACCGAT
GATGCTGATTTACCTGATGACTTGCTTCCCCTCTATCAGCTTCTAGACTGGCAAGGTCAAGATCTGGATCAGTTGGCACA
ACACTATCAGGGTTCAACAGCCGAACTAACAGCTCAATTGATGGAACTTGAACTACTGGGTGTGTGTATTCAACAATCAG
GTCGCTATCTGCGTTGTAGAAGCCCCTATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q6FFH8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baylyi ADP1

100

100

1

  dprA Acinetobacter baumannii D1279779

70.079

99.478

0.697

  dprA Acinetobacter baumannii strain A118

70.079

99.478

0.697

  dprA Vibrio cholerae strain A1552

42.262

87.728

0.371