Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N5P16_RS00870 Genome accession   NZ_CP104734
Coordinates   188672..190159 (+) Length   495 a.a.
NCBI ID   WP_004920762.1    Uniprot ID   A0A7G2SI48
Organism   Acinetobacter baylyi strain JAT2044     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 183672..195159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS00845 (N5P16_00845) ribD 184614..185702 (-) 1089 WP_011182005.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  N5P16_RS00850 (N5P16_00850) nrdR 185695..186174 (-) 480 WP_004920757.1 transcriptional regulator NrdR -
  N5P16_RS00855 (N5P16_00855) - 186297..187697 (-) 1401 WP_004920758.1 ammonium transporter -
  N5P16_RS00860 (N5P16_00860) glnK 187759..188097 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  N5P16_RS00865 (N5P16_00865) - 188375..188602 (+) 228 WP_026056902.1 accessory factor UbiK family protein -
  N5P16_RS00870 (N5P16_00870) comM 188672..190159 (+) 1488 WP_004920762.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N5P16_RS00875 (N5P16_00875) - 190228..191052 (-) 825 WP_004920764.1 TorF family putative porin -
  N5P16_RS00880 (N5P16_00880) - 191675..192976 (+) 1302 WP_004920766.1 OprD family porin -
  N5P16_RS00885 (N5P16_00885) ppa 193067..193594 (-) 528 WP_004920767.1 inorganic diphosphatase -
  N5P16_RS00890 (N5P16_00890) - 193721..194119 (-) 399 WP_004920768.1 MAPEG family protein -
  N5P16_RS00895 (N5P16_00895) - 194230..194610 (+) 381 WP_004920770.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54268.24 Da        Isoelectric Point: 8.1390

>NTDB_id=731680 N5P16_RS00870 WP_004920762.1 188672..190159(+) (comM) [Acinetobacter baylyi strain JAT2044]
MSFAKIFTRGVLGLHAPQIEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEGCTDQYELIGELALDGHLRPVTSALTIAIACQQAKHQLIAPDENGQEIGQLPDFSSYTAAHL
KQVCEHFLKITLLSPNKTAVLNTQHRYSLDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLTP
QENLEVASIYSIANTSHPFGLRPFRAPHHTASAIALVGGGSNPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLEAKE
ITISRAARQISFPANFQLIAAMNPCPCGYAFSQDQRCQCTPEAIRRYQARISGPLLDRIDLHIDVPPLQANELQSTAPTE
NSASVRVRVENAYTYQIKRQNCLNQALTPRQLEEIAQLSPASQKIMALAQQKLNLSARSYHRILRVARTIADLEQSPEIE
RHHLNEALSYRSEHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=731680 N5P16_RS00870 WP_004920762.1 188672..190159(+) (comM) [Acinetobacter baylyi strain JAT2044]
ATGTCCTTTGCAAAAATTTTTACGCGGGGTGTTTTGGGTTTACACGCACCACAAATTGAAGTTGAAGTTCATTTAAGTCA
AGGACTTCCTTCACTGACTATCGTTGGATTACCCGAAGCCGCGGTCCGTGAAAGTAAAGATCGTGTTCGTTCTGCCATCA
TCAATAGTGGTTTTCAATTCCCGACCAAGCGCCTAACCATTAATTTAGCACCAGCCGATCTGCCCAAAGATGGTTCACGT
CTGGATCTTCCTATTGCCTTGGGTATTTTAATTGCTTCAGGTCAGTTACCTGAAGGTTGTACAGATCAATATGAACTGAT
TGGTGAACTGGCTTTAGACGGTCATTTACGCCCAGTCACCAGTGCATTGACTATTGCCATCGCATGTCAACAAGCCAAAC
ATCAATTAATTGCACCTGATGAAAATGGCCAAGAGATTGGCCAGCTTCCTGATTTTTCTTCATATACTGCTGCCCATTTA
AAACAGGTATGTGAGCATTTTTTAAAGATCACACTGCTCTCTCCAAATAAAACTGCTGTTTTAAATACGCAACATCGCTA
TTCACTGGATCTGGCTGATGTCAAAGGTCAGCTTCGTCCAAGACGCGCTCTTGAGATCGCTGCGGCTGGTGGGCATTCAT
TACTTTTTCGTGGGCCACCTGGAACAGGAAAAACATTGCTGGCTTCTCGCTTACCGAGTATTTTGCCACCGCTTACCCCT
CAAGAGAATCTTGAAGTAGCGAGTATCTATTCTATCGCCAATACCTCTCATCCTTTTGGGCTTCGACCATTTAGGGCACC
CCATCATACAGCTTCGGCTATTGCTTTAGTGGGAGGGGGTTCAAATCCAAAACCAGGTGAAATTACCTTATCGCATTTAG
GCGTTTTATTTTTGGACGAACTTCCAGAATTTGATCGCAAAGTTCTTGAAGTATTGCGTCAACCCTTAGAAGCGAAGGAA
ATTACTATTTCGCGGGCAGCCCGTCAGATTTCTTTTCCTGCAAACTTTCAGTTAATTGCTGCCATGAATCCTTGTCCGTG
TGGCTATGCCTTTAGTCAGGATCAACGTTGTCAGTGTACTCCAGAAGCCATTCGTCGTTATCAGGCTCGAATTTCTGGTC
CATTATTAGATCGAATTGACTTACACATTGATGTACCACCATTACAGGCCAACGAATTACAAAGTACAGCCCCTACTGAA
AATTCTGCCAGTGTAAGAGTGCGTGTAGAAAATGCCTATACGTACCAAATCAAACGACAAAACTGTTTAAATCAAGCACT
CACGCCACGACAGCTTGAAGAAATAGCCCAGCTTAGTCCTGCTTCTCAGAAAATTATGGCTCTTGCCCAGCAAAAGCTCA
ATCTGTCAGCACGCTCCTATCATCGGATTTTACGCGTTGCACGCACCATTGCCGATCTGGAACAGAGCCCTGAGATTGAG
CGTCATCATTTAAATGAAGCCTTATCCTATCGCAGTGAACATAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SI48

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.501

100

0.501
  comM Legionella pneumophila str. Paris

49.499

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.499

100

0.499
  comM Vibrio campbellii strain DS40M4

49.194

100

0.493
  comM Vibrio cholerae strain A1552

49.194

100

0.493
  comM Glaesserella parasuis strain SC1401

48.703

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.129

100

0.459