Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N5P21_RS01615 Genome accession   NZ_CP104727
Coordinates   363338..364825 (-) Length   495 a.a.
NCBI ID   WP_261747359.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5.80     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 358338..369825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P21_RS01590 (N5P21_01590) - 358643..358945 (+) 303 WP_253411001.1 hypothetical protein -
  N5P21_RS01595 (N5P21_01595) - 359129..360304 (+) 1176 WP_253410999.1 acyltransferase -
  N5P21_RS01600 (N5P21_01600) - 360330..361142 (-) 813 WP_261747357.1 TlpA disulfide reductase family protein -
  N5P21_RS01605 (N5P21_01605) - 361478..362929 (-) 1452 WP_261747358.1 PLP-dependent aminotransferase family protein -
  N5P21_RS01610 (N5P21_01610) - 363104..363334 (+) 231 WP_058488049.1 DUF1127 domain-containing protein -
  N5P21_RS01615 (N5P21_01615) comM 363338..364825 (-) 1488 WP_261747359.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N5P21_RS01620 (N5P21_01620) - 365012..365278 (-) 267 WP_074983184.1 accessory factor UbiK family protein -
  N5P21_RS01625 (N5P21_01625) - 365371..367401 (-) 2031 WP_261747360.1 acyltransferase family protein -
  N5P21_RS01630 (N5P21_01630) glnK 367947..368285 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  N5P21_RS01635 (N5P21_01635) - 368321..369655 (+) 1335 WP_253392422.1 ammonium transporter -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52260.93 Da        Isoelectric Point: 7.5637

>NTDB_id=731584 N5P21_RS01615 WP_261747359.1 363338..364825(-) (comM) [Pseudomonas citronellolis strain G5.80]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNSGFEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAANGQLAGASLDDLECLGELALSGALRPVQGVLPAALAARAAGRALVVPKENAEEASLASGLTVYAVGHL
LELAAHLTGQTPLAPYQARGLLRETPPYPDLAEVQGQAAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLSE
DEALQVAAIHSVSGRGPLTHWPQRPFRQPHHSASAAALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLEG
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVGRETTRLVPQSGS
LGSAEVAAQVASARERQLARQGCANAVLDLKSMHHNCALDNQDQAWLETAGERLDLSLRALHRILKVARTLADLEGAERI
ARPHLAEALQYRAGH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=731584 N5P21_RS01615 WP_261747359.1 363338..364825(-) (comM) [Pseudomonas citronellolis strain G5.80]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAGGCTCCCGGTGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAACTCCGGCTTCGAATTCCCCGCCCGACGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTGGGCCTGCTCGCCGCCAACGGCCAGTTGGCCGGCGCCAGCCTGGACGACCTCGAATGCCT
CGGTGAACTGGCCCTGTCCGGCGCCCTGCGCCCGGTGCAGGGCGTGCTACCGGCCGCCCTGGCGGCACGCGCCGCCGGCC
GCGCCCTGGTGGTGCCGAAGGAGAATGCCGAGGAAGCAAGCCTGGCCAGCGGCCTGACCGTCTACGCCGTGGGCCATCTG
CTGGAGCTGGCCGCGCACCTGACCGGCCAGACGCCCCTGGCGCCCTACCAGGCCCGCGGCCTGCTGCGGGAAACCCCGCC
CTACCCCGATCTCGCCGAGGTCCAGGGCCAGGCCGCGGCCAAGCGCGCCCTGCTGGTGGCCGCGGCCGGGTCGCACAACC
TGCTGCTGAGCGGCCCGCCGGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGGCTGCTGCCGCCGCTGAGCGAA
GACGAGGCATTGCAGGTGGCGGCCATCCACTCCGTGTCCGGGCGCGGGCCGCTGACGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCGCACCACAGCGCCTCGGCTGCCGCGCTGGTCGGCGGCGGCAGCCGGCCGCAACCTGGGGAGATCACCCTGGCCC
ACGAAGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCGATCGCAAGGTCCTGGAAGTGCTCCGCGAGCCCCTGGAAGGG
GGCGAAATCGTGATCGCCCGGGCCAATGGCCGGGTGCGCTTCCCCGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCAGCGGCCGCTGCCGTTGCACCCCGGAGCAGATCCAACGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACAGTGGGCCGCGAAACTACGCGCCTCGTCCCTCAGAGTGGCAGC
CTGGGCAGCGCCGAGGTCGCCGCGCAGGTGGCCAGCGCCCGCGAACGGCAACTGGCGCGACAGGGTTGCGCGAACGCCGT
CCTCGACCTCAAATCAATGCACCATAATTGTGCGCTGGACAATCAGGACCAGGCCTGGCTGGAAACCGCCGGCGAGCGTC
TGGACCTGTCCCTGCGCGCCCTGCACCGCATCCTCAAGGTCGCCCGCACCCTGGCCGACCTGGAAGGCGCCGAACGCATC
GCCCGGCCGCACCTGGCCGAGGCCCTGCAATACCGCGCCGGGCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.056

100

0.572
  comM Vibrio campbellii strain DS40M4

56.855

100

0.57
  comM Haemophilus influenzae Rd KW20

55.01

100

0.566
  comM Glaesserella parasuis strain SC1401

53.846

100

0.552
  comM Legionella pneumophila str. Paris

49.901

100

0.509
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.473