Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GZN30_RS13085 Genome accession   NZ_AP019657
Coordinates   2899181..2900704 (+) Length   507 a.a.
NCBI ID   WP_075648177.1    Uniprot ID   A0A3N3E198
Organism   Vibrio ponticus strain DSM 16217     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2894181..2905704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS13070 ilvE 2895800..2896744 (-) 945 WP_075648174.1 branched-chain-amino-acid transaminase -
  GZN30_RS13075 ilvM 2896757..2897041 (-) 285 WP_075648175.1 acetolactate synthase 2 small subunit -
  GZN30_RS13080 ilvG 2897043..2898689 (-) 1647 WP_075648176.1 acetolactate synthase 2 catalytic subunit -
  GZN30_RS13085 comM 2899181..2900704 (+) 1524 WP_075648177.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GZN30_RS13090 - 2900775..2901743 (-) 969 WP_075648178.1 DUF2860 domain-containing protein -
  GZN30_RS13095 - 2901920..2902795 (+) 876 Protein_2504 acyltransferase -
  GZN30_RS13100 - 2902883..2903485 (-) 603 WP_075648179.1 thiol:disulfide interchange protein DsbA/DsbL -
  GZN30_RS13105 - 2903511..2904497 (-) 987 WP_075648180.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54850.96 Da        Isoelectric Point: 9.2988

>NTDB_id=73131 GZN30_RS13085 WP_075648177.1 2899181..2900704(+) (comM) [Vibrio ponticus strain DSM 16217]
MGLAVVYSRASVGVEAPLVTVEVHISNGMPGFALVGLPETTVKESRDRVRSAILNSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASQQIPLQALKNQEFVGELALSGELRAVKGVLPAALTVQNHGRSLVVPHANGDQAALVGKEIHKSAQSL
LEVCADLCGQQKLALHQTPASVEMPSLTRDLQDIIGQQQGKRALEIAAAGHHNLLFLGPPGTGKTMLASRLSDLLPEMSN
QEAMESASVASLTQQEINQYNWKQRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDALREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPSGHYDASKPQGNSQAALRYLSRLSGPLLDRFDMSIEIPALPKGTLAAGGER
GETTSEVKRRVLQAREVMFARGGKANALLASREIERDCRLEKSDAQFLEQALHRLGLSVRAYHRIIKVARTIADLAGEEH
IARQHLAEALGYRAMDRLLKHLHAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=73131 GZN30_RS13085 WP_075648177.1 2899181..2900704(+) (comM) [Vibrio ponticus strain DSM 16217]
ATGGGATTAGCGGTGGTTTATAGCCGAGCATCGGTGGGGGTTGAAGCCCCGCTGGTGACGGTGGAAGTGCACATCAGTAA
CGGTATGCCGGGGTTTGCTTTGGTCGGCTTGCCGGAAACCACGGTGAAAGAATCTCGCGATCGGGTACGCAGTGCGATCC
TCAATTCGCGCTTTGAATTCCCTGCCAAACGTATCACGGTAAATTTAGCGCCGGCGGATCTACCCAAAGAGGGCGGTCGG
TTTGATTTGCCAATAGCACTGGGTATTTTGGCGGCTTCACAGCAAATTCCGTTACAAGCACTCAAAAACCAAGAGTTTGT
CGGAGAACTGGCGCTGTCAGGCGAACTTCGGGCGGTCAAAGGTGTGTTGCCTGCGGCCTTAACGGTGCAAAATCACGGGC
GGAGCTTAGTGGTACCGCACGCCAATGGCGACCAAGCGGCACTAGTGGGGAAAGAGATACATAAATCAGCACAAAGCCTC
CTCGAGGTGTGCGCAGATCTCTGTGGTCAGCAAAAGCTGGCACTGCACCAAACGCCAGCATCGGTCGAAATGCCAAGTTT
AACTCGCGATTTGCAAGATATTATCGGTCAGCAGCAGGGTAAGCGTGCGTTAGAAATCGCGGCGGCAGGTCATCATAATT
TGTTGTTTCTTGGTCCTCCCGGTACCGGGAAAACCATGCTGGCTTCTCGGTTAAGTGATCTATTGCCTGAGATGTCCAAT
CAAGAGGCGATGGAGTCAGCCTCGGTCGCGTCATTGACTCAACAAGAAATTAATCAATACAACTGGAAGCAGCGACCATT
TCGCGCTCCGCATCATTCCAGCTCAATGGCGGCGCTGGTGGGCGGCGGCTCAGTACCGAGACCGGGTGAGATCTCTCTAG
CCCACAATGGCTTGCTGTTTCTTGACGAGATGCCTGAGTTTGAACGTAAAGTGCTGGATGCACTGCGTGAGCCGCTTGAG
TCAGGTGAGATCATTATCTCGCGTGCGCAGGGTAAAACCCGTTTTCCCGCCCGTTTCCAATTAGTCGGGGCGCTTAATCC
CAGCCCTTCGGGTCATTATGATGCCAGTAAACCGCAAGGTAATAGCCAAGCGGCGCTGCGATATCTGAGCCGTCTTTCTG
GACCGTTGCTTGATCGCTTTGATATGTCGATTGAAATCCCTGCCTTGCCCAAAGGGACATTGGCGGCAGGTGGTGAGCGA
GGCGAAACAACGTCAGAAGTTAAGCGGCGCGTGTTGCAGGCGCGTGAGGTGATGTTTGCGCGTGGTGGTAAAGCGAATGC
GCTGCTGGCGAGTCGAGAGATTGAGCGAGATTGCCGTTTAGAGAAAAGTGATGCGCAGTTTTTAGAGCAAGCCCTGCATC
GACTAGGTCTATCGGTTCGAGCTTATCATCGCATCATTAAAGTCGCGCGCACCATTGCTGACTTGGCTGGTGAAGAGCAT
ATTGCTCGCCAACACCTTGCCGAAGCTTTAGGTTATCGTGCGATGGATCGCTTGTTGAAACATCTTCATGCCCAAGCGGT
TTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3N3E198

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

82.051

100

0.821
  comM Vibrio campbellii strain DS40M4

81.46

100

0.815
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

63.137

100

0.635
  comM Legionella pneumophila str. Paris

49.206

99.408

0.489
  comM Legionella pneumophila strain ERS1305867

49.206

99.408

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.803

0.43

Multiple sequence alignment