Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GZN30_RS00300 Genome accession   NZ_AP019657
Coordinates   50185..50718 (+) Length   177 a.a.
NCBI ID   WP_075650865.1    Uniprot ID   -
Organism   Vibrio ponticus strain DSM 16217     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 45185..55718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS00285 uvrA 45302..48124 (-) 2823 WP_075650871.1 excinuclease ABC subunit UvrA -
  GZN30_RS00290 galU 48250..49122 (-) 873 WP_075650869.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GZN30_RS00295 qstR 49240..49887 (-) 648 WP_075650867.1 LuxR C-terminal-related transcriptional regulator Regulator
  GZN30_RS00300 ssb 50185..50718 (+) 534 WP_075650865.1 single-stranded DNA-binding protein Machinery gene
  GZN30_RS00305 csrD 50922..52928 (+) 2007 WP_075650863.1 RNase E specificity factor CsrD -
  GZN30_RS00310 - 52935..54377 (+) 1443 WP_075650861.1 MSHA biogenesis protein MshI -
  GZN30_RS00315 - 54377..55027 (+) 651 WP_075650859.1 type II secretion system protein GspM -
  GZN30_RS00320 - 55020..55343 (+) 324 WP_075650857.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19754.91 Da        Isoelectric Point: 5.2170

>NTDB_id=73107 GZN30_RS00300 WP_075650865.1 50185..50718(+) (ssb) [Vibrio ponticus strain DSM 16217]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITVATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEIVVQGYNGVMQMLGGRQGGQGAPMGGQQQQQQGWGQPQQPAMQQQQAPQQRAPQQPPQQ
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=73107 GZN30_RS00300 WP_075650865.1 50185..50718(+) (ssb) [Vibrio ponticus strain DSM 16217]
ATGGCTAGCCGTGGAGTAAACAAAGTTATTTTAGTGGGTAACTTAGGCCAAGACCCAGAAGTGCGCTATATGCCTAGTGG
CGGCGCAGTAGCAAACATTACGGTTGCGACTTCAGAAACATGGCGTGATAAAGCGACTGGCGAACAGCGCGAGAAAACTG
AATGGCACCGTGTGGCTCTATTTGGCAAACTTGCTGAAGTTGCCGGTGAGTACCTGCGCAAAGGCTCTCAAGTATACATT
GAAGGTCAATTGCAAACACGTAAGTGGCAGAACCAGCAAGGTCAAGATCAGTACACAACTGAGATCGTGGTACAAGGCTA
CAATGGCGTAATGCAAATGCTTGGTGGTCGTCAAGGTGGTCAAGGTGCACCTATGGGCGGTCAACAGCAGCAACAGCAGG
GTTGGGGACAACCTCAACAGCCAGCAATGCAGCAACAGCAAGCGCCTCAACAGCGTGCGCCTCAGCAACCACCTCAGCAA
CAGCCTCAATATAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.667

100

0.831
  ssb Glaesserella parasuis strain SC1401

54.839

100

0.576
  ssb Neisseria meningitidis MC58

47.283

100

0.492
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.48

Multiple sequence alignment