Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GZN30_RS00295 Genome accession   NZ_AP019657
Coordinates   49240..49887 (-) Length   215 a.a.
NCBI ID   WP_075650867.1    Uniprot ID   A0A3N3E579
Organism   Vibrio ponticus strain DSM 16217     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 44240..54887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZN30_RS00285 uvrA 45302..48124 (-) 2823 WP_075650871.1 excinuclease ABC subunit UvrA -
  GZN30_RS00290 galU 48250..49122 (-) 873 WP_075650869.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GZN30_RS00295 qstR 49240..49887 (-) 648 WP_075650867.1 LuxR C-terminal-related transcriptional regulator Regulator
  GZN30_RS00300 ssb 50185..50718 (+) 534 WP_075650865.1 single-stranded DNA-binding protein Machinery gene
  GZN30_RS00305 csrD 50922..52928 (+) 2007 WP_075650863.1 RNase E specificity factor CsrD -
  GZN30_RS00310 - 52935..54377 (+) 1443 WP_075650861.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24788.47 Da        Isoelectric Point: 7.2189

>NTDB_id=73106 GZN30_RS00295 WP_075650867.1 49240..49887(-) (qstR) [Vibrio ponticus strain DSM 16217]
MVKNIYARTLYFLCEDKDGHYPLVDLIEEGLGVAIPRMEPEDFMLAMQQHKHKILLIDHNNYQQLSSAIRSLPLSNKIFE
TVIFNVERRLTTDELLSFGNLKALFYSNDEIPHIAYGCGEVINSQNWLPRKVAAQLLHYYRHVIDSQTSPATVDLTTREI
QILRSLQTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAISWAKQHLVS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=73106 GZN30_RS00295 WP_075650867.1 49240..49887(-) (qstR) [Vibrio ponticus strain DSM 16217]
ATGGTTAAAAACATCTACGCGAGAACACTCTATTTTCTTTGTGAAGATAAAGATGGGCATTACCCACTGGTGGACTTAAT
TGAAGAAGGGTTAGGGGTAGCAATCCCTCGTATGGAACCAGAAGACTTTATGCTGGCTATGCAACAACACAAGCATAAGA
TCCTATTAATTGATCACAACAATTATCAGCAATTGAGTAGTGCAATTCGTAGCCTACCACTTTCAAACAAAATTTTTGAA
ACCGTCATATTCAATGTCGAAAGACGTTTGACCACCGATGAGTTACTTAGCTTTGGTAACTTAAAAGCCTTGTTTTACAG
CAACGATGAAATACCACATATAGCCTATGGGTGTGGCGAAGTGATTAATAGCCAAAACTGGTTACCGCGTAAAGTCGCCG
CTCAACTATTACATTACTACCGTCATGTCATCGACAGCCAAACCTCTCCTGCGACCGTCGACCTGACAACGAGAGAAATT
CAAATCTTGCGTAGTTTGCAAACTGGAGCCTCAAATAATCAGATTGCTGAAGATCTATTTATTAGTGAATTCACCGTCAA
ATCACATCTTTATCAGATTTTCAAAAAGCTATCGGTAAAAAATAGAGTCCAGGCCATATCATGGGCAAAGCAACATTTAG
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3N3E579

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

56.744

100

0.567
  qstR Vibrio cholerae strain A1552

56.542

99.535

0.563
  qstR Vibrio parahaemolyticus RIMD 2210633

56.279

100

0.563

Multiple sequence alignment