Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GZK95_RS01890 Genome accession   NZ_AP019654
Coordinates   385586..386119 (+) Length   177 a.a.
NCBI ID   WP_075709768.1    Uniprot ID   A0A1Q9HC36
Organism   Vibrio panuliri strain JCM 19500     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 380586..391119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS01875 uvrA 380717..383539 (-) 2823 WP_075713985.1 excinuclease ABC subunit UvrA -
  GZK95_RS01880 galU 383656..384528 (-) 873 WP_075713983.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GZK95_RS01885 qstR 384647..385294 (-) 648 WP_075709767.1 LuxR C-terminal-related transcriptional regulator Regulator
  GZK95_RS01890 ssb 385586..386119 (+) 534 WP_075709768.1 single-stranded DNA-binding protein Machinery gene
  GZK95_RS01895 csrD 386310..388313 (+) 2004 WP_075713981.1 RNase E specificity factor CsrD -
  GZK95_RS01900 - 388320..389762 (+) 1443 WP_075713979.1 MSHA biogenesis protein MshI -
  GZK95_RS01905 gspM 389762..390412 (+) 651 WP_075713977.1 type II secretion system protein GspM -
  GZK95_RS01910 - 390405..390728 (+) 324 WP_404817695.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19744.92 Da        Isoelectric Point: 6.2342

>NTDB_id=73079 GZK95_RS01890 WP_075709768.1 385586..386119(+) (ssb) [Vibrio panuliri strain JCM 19500]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGYNGVMQMLGGRQGGQGAPMGGHQPQQQQQQGWGQPQQPAMQQKPAPQQQHAPQQ
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=73079 GZK95_RS01890 WP_075709768.1 385586..386119(+) (ssb) [Vibrio panuliri strain JCM 19500]
ATGGCTAGCCGTGGAGTAAACAAAGTTATTTTAGTGGGTAACTTAGGTCAGGACCCAGAAGTGCGCTACATGCCTAGCGG
TGGCGCAGTTGCAAATATTACTATTGCAACTTCAGAAACTTGGCGCGATAAGGCGACAGGTGAACAACGTGAGAAAACTG
AGTGGCATCGTGTTGCCCTGTTTGGCAAACTGGCAGAAGTTGCTGGCGAATATCTACGTAAAGGTTCACAAGTATATATT
GAAGGTCAACTTCAAACTCGCAAATGGCAGAACCAACAAGGCCAAGACCAATACACCACCGAAGTGGTTGTTCAAGGCTA
TAACGGTGTGATGCAAATGCTAGGTGGTCGCCAAGGTGGACAAGGTGCGCCTATGGGTGGTCATCAGCCACAACAGCAGC
AACAGCAAGGTTGGGGACAGCCGCAGCAGCCTGCAATGCAGCAAAAACCTGCGCCTCAACAGCAACATGCACCTCAGCAA
CAGCCTCAGTACAATGAGCCGCCAATGGATTTTGACGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q9HC36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.564

100

0.825
  ssb Glaesserella parasuis strain SC1401

52.062

100

0.571
  ssb Neisseria meningitidis MC58

47.458

100

0.475
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.475

Multiple sequence alignment