Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GZK95_RS01885 Genome accession   NZ_AP019654
Coordinates   384647..385294 (-) Length   215 a.a.
NCBI ID   WP_075709767.1    Uniprot ID   A0A1Q9HC33
Organism   Vibrio panuliri strain JCM 19500     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 379647..390294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZK95_RS01875 uvrA 380717..383539 (-) 2823 WP_075713985.1 excinuclease ABC subunit UvrA -
  GZK95_RS01880 galU 383656..384528 (-) 873 WP_075713983.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GZK95_RS01885 qstR 384647..385294 (-) 648 WP_075709767.1 LuxR C-terminal-related transcriptional regulator Regulator
  GZK95_RS01890 ssb 385586..386119 (+) 534 WP_075709768.1 single-stranded DNA-binding protein Machinery gene
  GZK95_RS01895 csrD 386310..388313 (+) 2004 WP_075713981.1 RNase E specificity factor CsrD -
  GZK95_RS01900 - 388320..389762 (+) 1443 WP_075713979.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25002.95 Da        Isoelectric Point: 9.4917

>NTDB_id=73078 GZK95_RS01885 WP_075709767.1 384647..385294(-) (qstR) [Vibrio panuliri strain JCM 19500]
MAKNIYARTLYFLCENKNAHYPIVDLIEKKLCVPIPRMEPEDFMLAMQQHKHKILLIDHNNYQQLQSAIRNLPLSNKIFE
TVIFNVERRLTTDELLSFGNLKALFYKDDSITRIAQGCGEVINSQNWLPRKVAAQLLHYYRHVIDSQTSPATVDLTTREI
QILRSLQTGASNNQIAEDLFISEFTVKSHLYQIFKKLSVKNRVQAISWAKQHLMS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=73078 GZK95_RS01885 WP_075709767.1 384647..385294(-) (qstR) [Vibrio panuliri strain JCM 19500]
ATGGCTAAAAACATCTACGCACGAACCTTATATTTCCTATGTGAAAACAAAAATGCCCATTACCCTATTGTAGACCTAAT
CGAAAAAAAACTCTGTGTGCCGATTCCTCGCATGGAACCTGAAGATTTTATGCTCGCCATGCAACAGCATAAACACAAAA
TTTTGTTAATTGATCATAACAACTATCAGCAACTGCAAAGCGCAATCCGCAATCTCCCCCTCTCGAACAAGATCTTTGAA
ACCGTGATCTTTAATGTTGAAAGACGGCTGACCACGGATGAACTGTTGAGTTTTGGTAACTTGAAAGCACTGTTTTACAA
AGATGATAGTATCACTCGAATAGCCCAAGGATGTGGTGAAGTGATTAACAGCCAGAATTGGTTACCTCGCAAAGTAGCCG
CACAACTTCTGCATTACTATCGCCATGTCATCGATAGCCAAACCTCTCCCGCGACCGTGGATTTAACAACCAGAGAAATC
CAAATTTTACGTAGCTTGCAAACAGGGGCATCAAATAATCAAATTGCCGAAGATTTGTTTATCAGCGAGTTCACCGTCAA
ATCGCACCTTTACCAAATATTTAAAAAACTCTCAGTTAAAAATCGAGTACAAGCGATTTCATGGGCAAAACAGCACTTAA
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q9HC33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

58.605

100

0.586
  qstR Vibrio parahaemolyticus RIMD 2210633

57.674

100

0.577
  qstR Vibrio cholerae strain A1552

56.542

99.535

0.563

Multiple sequence alignment