Detailed information NTG0730618

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N5O83_RS03640
• Genome accession: NZ_CP104579
• Coordinates: 773716..774585 (-)
• Length: 289 a.a.
• NCBI ID: WP_279534408.1
• Uniprot ID: A0AA42TXJ2
• Organism: Pseudomonas oleovorans strain GD04132
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 768716..779585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5O83_RS03605 (N5O83_03610)	-	769657..769830 (-)	174	WP_169971266.1	DUF3094 family protein	-
N5O83_RS03610 (N5O83_03615)	-	770055..770609 (-)	555	WP_279534406.1	MOSC domain-containing protein	-
N5O83_RS03615 (N5O83_03620)	-	770606..771235 (-)	630	WP_004425012.1	DUF1780 domain-containing protein	-
N5O83_RS03620 (N5O83_03625)	-	771446..772135 (+)	690	WP_279534407.1	energy-coupling factor ABC transporter permease	-
N5O83_RS03625 (N5O83_03630)	-	772242..772457 (+)	216	WP_247723116.1	hypothetical protein	-
N5O83_RS03630 (N5O83_03635)	yacG	772621..772815 (-)	195	WP_017678823.1	DNA gyrase inhibitor YacG	-
N5O83_RS03635 (N5O83_03640)	coaE	772812..773420 (-)	609	WP_004425004.1	dephospho-CoA kinase	-
N5O83_RS03640 (N5O83_03645)	pilD	773716..774585 (-)	870	WP_279534408.1	A24 family peptidase	Machinery gene
N5O83_RS03645 (N5O83_03650)	pilC	774586..775803 (-)	1218	WP_055984076.1	type II secretion system F family protein	Machinery gene
N5O83_RS03650 (N5O83_03655)	pilB	775806..777509 (-)	1704	WP_279534409.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N5O83_RS03655 (N5O83_03660)	pilE	777847..778386 (+)	540	WP_279534410.1	pilin	Machinery gene
N5O83_RS03660 (N5O83_03665)	tfpZ	778550..779284 (+)	735	WP_279534411.1	TfpX/TfpZ family type IV pilin accessory protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32038.28 Da
• Isoelectric Point: 6.4606

>NTDB_id=730618 N5O83_RS03640 WP_279534408.1 773716..774585(-) (pilD) [Pseudomonas oleovorans strain GD04132]
MLVLDFLASHMLAFVLCALLLGLLIGSFLNVVIYRLPLMLQRDWQSQAREVLELPPAPTTQTFNLILPNSCCPQCDHEIR
PWENIPVISYLFLRGKCSNCKIPISKRYPIVELACGLLSAYVAWHFGFTWQAGAMLVLAWGLLAMSLIDADHQILPDVLV
LPLLWLGLIVNYFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMLRMRGSDSGTPIPFGPYLAIAGWIALLWGDVITGNYLKFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=730618 N5O83_RS03640 WP_279534408.1 773716..774585(-) (pilD) [Pseudomonas oleovorans strain GD04132]
ATGCTCGTTCTCGACTTCCTGGCCAGCCATATGCTGGCCTTTGTTTTGTGTGCTCTGCTACTGGGCCTGCTGATTGGCAG
CTTCCTCAATGTAGTGATCTATCGCCTACCGTTGATGCTGCAACGTGATTGGCAGAGTCAAGCGCGTGAGGTGCTGGAAT
TGCCGCCGGCACCAACCACCCAGACCTTCAACCTGATCCTGCCCAATTCCTGCTGCCCACAATGCGACCATGAGATTCGC
CCCTGGGAGAACATCCCGGTCATTAGCTATCTGTTCCTGCGCGGCAAGTGTTCGAACTGCAAAATCCCGATCAGCAAGCG
TTACCCCATCGTTGAACTGGCCTGCGGGCTGCTTTCCGCTTACGTCGCCTGGCATTTCGGTTTCACCTGGCAGGCCGGAG
CGATGCTGGTGCTGGCCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAGATTCTGCCCGACGTGCTGGTG
CTGCCATTGCTGTGGCTGGGTTTGATCGTCAATTACTTCGGGTTGTTCACCAGCCTGGAAGATGCCCTGTGGGGGGCGAT
TGCCGGTTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGCTGCTGGCGATGCTCGGGGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACCATTCTGCTGTCGTCACTGGTCGGC
GCGGTGCTGGGGGTCATTATGCTGCGCATGCGTGGCAGCGATTCCGGCACGCCGATTCCCTTCGGCCCTTATCTGGCGAT
TGCCGGGTGGATCGCCCTGCTGTGGGGCGATGTGATTACCGGCAATTATCTGAAGTTCGCTGGGTTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.015	94.81	0.512
pilD	Acinetobacter baumannii D1279779	51.761	98.27	0.509
pilD	Acinetobacter nosocomialis M2	51.408	98.27	0.505
pilD	Vibrio campbellii strain DS40M4	52.19	94.81	0.495
pilD	Neisseria gonorrhoeae MS11	50.19	91.003	0.457