Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N4261_RS02195 Genome accession   NZ_CP104562
Coordinates   509397..510911 (-) Length   504 a.a.
NCBI ID   WP_261758605.1    Uniprot ID   -
Organism   Roseateles amylovorans strain BIM B-1768     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 504397..515911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4261_RS02180 (N4261_02180) - 506875..507537 (+) 663 WP_261758602.1 glycine zipper 2TM domain-containing protein -
  N4261_RS02185 (N4261_02185) - 507831..508520 (-) 690 WP_261758603.1 hypothetical protein -
  N4261_RS02190 (N4261_02190) - 508507..509064 (-) 558 WP_261758604.1 hypothetical protein -
  N4261_RS02195 (N4261_02195) comM 509397..510911 (-) 1515 WP_261758605.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N4261_RS02200 (N4261_02200) - 511234..511812 (+) 579 WP_261758606.1 DUF6484 domain-containing protein -
  N4261_RS02205 (N4261_02205) - 511862..512728 (+) 867 WP_261760587.1 DUF4150 domain-containing protein -
  N4261_RS02210 (N4261_02210) - 512741..513178 (+) 438 WP_261758607.1 hypothetical protein -
  N4261_RS02215 (N4261_02215) - 513172..513675 (+) 504 WP_261758608.1 hypothetical protein -
  N4261_RS02220 (N4261_02220) - 513689..514771 (+) 1083 WP_261758609.1 DUF2169 domain-containing protein -
  N4261_RS02225 (N4261_02225) - 514907..515893 (+) 987 WP_261758610.1 hypothetical protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53357.22 Da        Isoelectric Point: 7.5496

>NTDB_id=730587 N4261_RS02195 WP_261758605.1 509397..510911(-) (comM) [Roseateles amylovorans strain BIM B-1768]
MSLAVIHSRALDGLSAAAVDVEVHLANGLPSFTLVGLADLEVKESRERVRAALQSSGLDFPTNKRITVNLSPADLPKEGA
RFDLPIALGLLAASGQVDAETLGSFECAGELALSGELRPVRGALAMALALRASGHRRELVLPRGCADEAALVQGLVVREA
QHLLDLVNALQPRSDAPLVRVQARPVPPPEAPPDLRDIKGQSAPKRALEVAAAGGLSVLFVGPPGTGKSMLAQRLPSLLP
PLPEAEALESAALLSVNGQFHPSRWAQRPFRAPHHSASAPALIGGGSPPRPGEITLAQHGILFLDELPEFHRASLEALRE
PLETGRVHISRSAHQAEFPARFQLVAAMNPCPCGQLGNPLQSCRCSPDQIARYQGRLSGPLLDRLDLLVEVPVLPPEVLA
AAPDGETSATVSQRVAAARDRALSRQGCINALLPAAQLDEHLKLEPAAEAMLHRAAGRLSWSGRSYHRVLRTARTVADLA
GSEAITAAHVAEAIQWRRALPGRS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=730587 N4261_RS02195 WP_261758605.1 509397..510911(-) (comM) [Roseateles amylovorans strain BIM B-1768]
ATGTCTCTCGCCGTGATCCACAGCCGCGCCCTGGACGGCCTGTCCGCCGCCGCCGTCGATGTGGAGGTTCATCTGGCCAA
CGGCCTGCCGAGCTTCACGCTCGTCGGCCTGGCCGACCTGGAGGTGAAGGAGTCCCGCGAGCGGGTGCGCGCCGCGCTGC
AGAGCAGCGGGCTGGACTTCCCCACGAACAAGCGCATCACCGTCAACCTGTCCCCGGCCGACCTGCCCAAGGAAGGCGCT
CGTTTCGACCTGCCGATCGCCCTCGGCCTGCTGGCGGCCAGCGGGCAGGTGGATGCCGAGACGCTGGGATCGTTCGAATG
CGCCGGCGAACTGGCGCTGTCCGGCGAGCTGCGTCCGGTTCGGGGTGCGCTGGCGATGGCGCTGGCGCTGCGTGCCAGCG
GGCACCGCCGCGAGCTGGTGCTGCCGCGCGGCTGCGCGGATGAGGCCGCACTGGTGCAGGGCCTGGTCGTGCGGGAGGCA
CAGCACCTGCTGGACTTGGTGAATGCGCTGCAGCCCCGCAGCGATGCGCCGCTGGTGCGGGTGCAGGCCCGCCCGGTGCC
GCCGCCCGAGGCGCCGCCGGATCTGCGGGACATCAAAGGCCAGTCCGCGCCCAAGCGCGCCCTCGAGGTCGCCGCCGCGG
GCGGCCTGAGCGTGTTGTTTGTCGGGCCCCCCGGCACCGGCAAGTCGATGCTGGCGCAGCGGTTGCCCAGCCTGCTGCCG
CCCTTGCCCGAGGCCGAGGCGCTGGAGTCGGCGGCGCTGCTCAGCGTCAATGGACAGTTCCATCCGTCTCGCTGGGCACA
GCGGCCCTTTCGGGCGCCGCACCACAGCGCGTCCGCACCCGCGTTGATCGGGGGAGGATCGCCCCCGAGACCCGGCGAGA
TCACGCTGGCTCAGCACGGCATCCTGTTCCTCGATGAGCTGCCTGAATTTCATCGCGCCTCGCTGGAAGCCCTGCGCGAG
CCGTTGGAGACCGGACGCGTGCACATCTCGCGCTCCGCCCACCAAGCGGAGTTCCCCGCGCGCTTCCAACTTGTGGCCGC
GATGAATCCCTGCCCCTGCGGCCAACTGGGTAATCCGCTGCAGAGCTGTCGATGCTCGCCGGATCAGATCGCGCGCTACC
AGGGTCGGCTCTCCGGCCCCTTGCTCGACCGGCTGGATCTGTTGGTCGAAGTGCCGGTGCTGCCGCCCGAAGTGCTCGCC
GCCGCGCCCGACGGCGAAACCAGCGCCACGGTCAGCCAACGTGTGGCGGCAGCCCGCGACCGGGCCCTGTCGCGCCAGGG
CTGCATCAATGCGCTGCTGCCCGCCGCCCAGTTGGATGAGCATCTGAAGCTCGAACCCGCCGCCGAGGCCATGCTGCATC
GCGCCGCCGGCCGGCTGTCCTGGTCGGGCCGCAGCTATCACCGGGTGCTGCGGACGGCCCGCACCGTCGCGGATCTGGCA
GGCAGCGAGGCCATCACCGCAGCCCACGTGGCCGAAGCAATCCAGTGGCGGCGCGCATTGCCGGGCCGAAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.2

99.206

0.518
  comM Haemophilus influenzae Rd KW20

51.195

99.603

0.51
  comM Vibrio campbellii strain DS40M4

51.2

99.206

0.508
  comM Glaesserella parasuis strain SC1401

49.004

99.603

0.488
  comM Legionella pneumophila str. Paris

46.169

100

0.466
  comM Legionella pneumophila strain ERS1305867

46.169

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.873

100

0.409