Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N5C08_RS00990 Genome accession   NZ_CP104557
Coordinates   222514..224004 (-) Length   496 a.a.
NCBI ID   WP_261744511.1    Uniprot ID   -
Organism   Pseudomonas promysalinigenes strain RL-WG26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 217514..229004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5C08_RS00970 (N5C08_00970) - 218026..218238 (+) 213 WP_060479964.1 DUF1656 domain-containing protein -
  N5C08_RS00975 (N5C08_00975) - 218235..219110 (+) 876 WP_060479963.1 HlyD family secretion protein -
  N5C08_RS00980 (N5C08_00980) - 219107..220525 (+) 1419 WP_261744509.1 efflux transporter outer membrane subunit -
  N5C08_RS00985 (N5C08_00985) - 220573..222360 (-) 1788 WP_261744510.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  N5C08_RS00990 (N5C08_00990) comM 222514..224004 (-) 1491 WP_261744511.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N5C08_RS00995 (N5C08_00995) - 224283..226277 (+) 1995 WP_261744512.1 DUF4034 domain-containing protein -
  N5C08_RS01000 (N5C08_01000) - 226297..226560 (-) 264 WP_060479960.1 accessory factor UbiK family protein -
  N5C08_RS01005 (N5C08_01005) glnK 226962..227300 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  N5C08_RS01010 (N5C08_01010) - 227349..228683 (+) 1335 WP_186478335.1 ammonium transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52794.51 Da        Isoelectric Point: 7.9666

>NTDB_id=730469 N5C08_RS00990 WP_261744511.1 222514..224004(-) (comM) [Pseudomonas promysalinigenes strain RL-WG26]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPLPALAELECLGELALSGKLRPVQGVLPAALAARQAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPAYAANGLVLQQQPYPDLSEVQGQIAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGQTPLSSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARETTTLNHQPSG
ETSADVAAKVAEAREVQHRRQGCANAFLSLEGLRQHCPLSVTDQAWLESACERLSLSLRAAHRLLKVARTLADLHGSQSI
GKGHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=730469 N5C08_RS00990 WP_261744511.1 222514..224004(-) (comM) [Pseudomonas promysalinigenes strain RL-WG26]
ATGTCCCTCGCCCTCGTTCATAGCCGCGCTCAAGTCGGCGTACAAGCCCCGGCGGTCAGCGTCGAAACGCATCTAGCCAA
TGGCCTGCCCCATCTCACTCTGGTGGGCTTGCCGGAAACCACGGTCAAAGAAAGCAAAGACCGAGTACGCAGCGCGATCG
TGAACTCCGGGCTGAACTACCCGCAGCGGCGCATCACTCAGAACCTTGCACCCGCCGACTTGCCCAAGGACGGCGGGCGC
TATGACCTGGCCATCGCGTTGGGCATTCTGGCTGCCGATGGCCAGGTGCCGCTGCCAGCCCTTGCGGAGCTGGAATGCCT
GGGCGAGCTGGCCCTGTCTGGCAAGCTGCGCCCTGTGCAGGGTGTGTTGCCGGCAGCGCTGGCGGCACGCCAGGCCGGCA
GGGCGCTGGTGGTGCCAAGGGAAAACGCCGAAGAAGCCAGCCTGGCTGGCGGATTGGTGGTTTATGCAGTGGGCCACCTG
CTGGAGTTGGTGGCCCACCTCAATGGCCAGGTGCCGTTGCCAGCCTATGCCGCCAACGGCCTAGTTCTGCAACAGCAGCC
CTATCCCGACCTGAGCGAGGTCCAAGGCCAAATTGCGGCCAAGCGGGCCTTGCTGCTGGCCGCAGCCGGGGCACACAACC
TGCTCTTCACCGGCCCGCCCGGCACGGGTAAGACCTTGCTCGCCAGCCGTCTGCCTGGCCTGTTGCCTCCCCTGGACGAG
CATGAGGCGCTGGAAGTGGCGGCGATTCAATCGGTCAGTGGCCAAACGCCCTTGAGTAGCTGGCCGCAGCGGCCCTTTCG
CCACCCCCATCACTCAGCCTCGGGGCCTGCGTTGGTTGGCGGCGGCAGCCGGCCACAGCCTGGCGAGATCACCCTGGCGC
ACCATGGCGTGCTGTTTCTTGACGAGCTGCCGGAATTTGAAAGGCGCGTACTCGAAGTGCTGCGCGAGCCCCTGGAGTCG
GGCGAAATCGTGATTGCCAGGGCTCGCGACAAGGTGCGTTTCCCGGCGCGCTTTCAGTTGGTTGCTGCCATGAACCCCTG
CCCCTGCGGCTATTTAGGCGACCCCACTGGTCGCTGTCGCTGCAGCACCGAGCAGATTGCACGCTACCGCAACAAGCTGT
CAGGCCCGCTATTGGACCGCATCGACCTGCACCTGACCGTCGCCCGCGAAACCACTACGCTCAACCACCAGCCGAGCGGT
GAGACCAGCGCCGATGTGGCCGCCAAGGTGGCCGAGGCGAGAGAAGTGCAGCATCGGCGACAAGGCTGCGCCAATGCGTT
TCTGAGCTTGGAGGGGTTGCGGCAACATTGTCCGCTTTCAGTGACGGATCAAGCGTGGCTGGAAAGCGCCTGTGAACGGT
TGAGCCTTTCTTTACGTGCGGCGCACCGGTTGTTGAAGGTTGCCCGTACTCTGGCAGATTTGCACGGCAGCCAGTCGATC
GGCAAAGGGCACCTCGCCGAGGCATTGCAGTACAGGCCGGGGAGCAGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.798

0.56
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio campbellii strain DS40M4

56.048

100

0.56
  comM Glaesserella parasuis strain SC1401

54

100

0.544
  comM Legionella pneumophila str. Paris

49.597

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.414

100

0.47