Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N5E84_RS11265 Genome accession   NZ_CP104554
Coordinates   2449697..2450227 (-) Length   176 a.a.
NCBI ID   WP_019282036.1    Uniprot ID   A0A233HL27
Organism   Vibrio sp. J502     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2444697..2455227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS11245 (N5E84_11245) - 2445167..2445493 (-) 327 WP_017043833.1 MSHA biogenesis protein MshK -
  N5E84_RS11250 (N5E84_11250) gspM 2445483..2446127 (-) 645 WP_019282033.1 type II secretion system protein GspM -
  N5E84_RS11255 (N5E84_11255) - 2446124..2447566 (-) 1443 WP_019282034.1 hypothetical protein -
  N5E84_RS11260 (N5E84_11260) csrD 2447579..2449567 (-) 1989 WP_029388191.1 RNase E specificity factor CsrD -
  N5E84_RS11265 (N5E84_11265) ssb 2449697..2450227 (-) 531 WP_019282036.1 single-stranded DNA-binding protein Machinery gene
  N5E84_RS11270 (N5E84_11270) qstR 2450513..2451160 (+) 648 WP_029388192.1 LuxR C-terminal-related transcriptional regulator Regulator
  N5E84_RS11275 (N5E84_11275) galU 2451278..2452147 (+) 870 WP_019282038.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  N5E84_RS11280 (N5E84_11280) uvrA 2452316..2455138 (+) 2823 WP_026029161.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19331.48 Da        Isoelectric Point: 5.2257

>NTDB_id=730448 N5E84_RS11265 WP_019282036.1 2449697..2450227(-) (ssb) [Vibrio sp. J502]
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQSAPQQAQ
PQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=730448 N5E84_RS11265 WP_019282036.1 2449697..2450227(-) (ssb) [Vibrio sp. J502]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGCGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTTGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGCCAGCTACAAACTCGTAAGTGGCAAGATCAAAGCGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGTTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAGGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGTCAGCTCCTCAACAGGCTCAA
CCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HL27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

85.393

100

0.864
  ssb Glaesserella parasuis strain SC1401

54.737

100

0.591
  ssb Neisseria gonorrhoeae MS11

45.556

100

0.466
  ssb Neisseria meningitidis MC58

45

100

0.46