Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   N5E84_RS11270 Genome accession   NZ_CP104554
Coordinates   2450513..2451160 (+) Length   215 a.a.
NCBI ID   WP_029388192.1    Uniprot ID   -
Organism   Vibrio sp. J502     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2445513..2456160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS11255 (N5E84_11255) - 2446124..2447566 (-) 1443 WP_019282034.1 hypothetical protein -
  N5E84_RS11260 (N5E84_11260) csrD 2447579..2449567 (-) 1989 WP_029388191.1 RNase E specificity factor CsrD -
  N5E84_RS11265 (N5E84_11265) ssb 2449697..2450227 (-) 531 WP_019282036.1 single-stranded DNA-binding protein Machinery gene
  N5E84_RS11270 (N5E84_11270) qstR 2450513..2451160 (+) 648 WP_029388192.1 LuxR C-terminal-related transcriptional regulator Regulator
  N5E84_RS11275 (N5E84_11275) galU 2451278..2452147 (+) 870 WP_019282038.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  N5E84_RS11280 (N5E84_11280) uvrA 2452316..2455138 (+) 2823 WP_026029161.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24981.71 Da        Isoelectric Point: 8.1663

>NTDB_id=730449 N5E84_RS11270 WP_029388192.1 2450513..2451160(+) (qstR) [Vibrio sp. J502]
MRKANYTRTIYFLCLDKEQEHPYIDHLTDRLGLPIPKIEPETLRQAYCSDKHKILMIDHADYALLQQRLGNCPLSSQHHE
TILINVLQRLTTNDLLTFGHLKGLFYKNDTLDKIAFGLGEIINGQNWLPRHAVSQLLHYYRYAFESHTAQVITDLTAREI
QILRCLQTGASNNQMSEDLFISEFTVKSHLYQIFKKLSVKNRVQAIAWANQNILS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=730449 N5E84_RS11270 WP_029388192.1 2450513..2451160(+) (qstR) [Vibrio sp. J502]
ATGAGAAAAGCAAACTATACCCGCACCATTTACTTTCTCTGTTTAGATAAAGAGCAAGAACACCCTTATATTGACCATTT
AACCGATCGGCTTGGGCTGCCCATTCCTAAAATTGAGCCCGAAACCCTGCGCCAAGCGTATTGTTCAGATAAACACAAAA
TATTGATGATTGACCATGCCGATTATGCGCTACTGCAGCAACGCTTGGGAAACTGCCCATTAAGCAGTCAGCATCATGAA
ACGATCCTTATCAATGTGTTGCAAAGATTAACCACGAATGACTTATTAACCTTTGGCCATTTAAAGGGGCTATTTTATAA
AAATGACACCCTAGATAAAATTGCATTTGGGCTTGGTGAAATCATTAACGGACAAAATTGGCTACCCAGACACGCTGTAA
GTCAGTTACTGCACTACTATCGCTACGCGTTTGAGTCCCATACTGCTCAAGTGATTACAGACTTAACCGCCCGCGAAATA
CAGATCCTCCGCTGCTTACAAACTGGCGCATCGAATAACCAAATGTCGGAAGATTTATTCATCAGTGAATTCACGGTCAA
ATCACATCTCTACCAAATATTCAAAAAGCTATCGGTCAAAAATAGGGTCCAAGCGATTGCGTGGGCCAATCAAAATATTC
TGTCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

67.29

99.535

0.67
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526