Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | NQS38_RS06430 | Genome accession | NZ_CP104496 |
| Coordinates | 1358256..1358777 (+) | Length | 173 a.a. |
| NCBI ID | WP_011000516.1 | Uniprot ID | Q8Y1Y0 |
| Organism | Ralstonia pseudosolanacearum strain Gj707 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1353256..1363777
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQS38_RS06405 (NQS38_06405) | recX | 1353635..1354114 (+) | 480 | WP_016723980.1 | recombination regulator RecX | - |
| NQS38_RS06410 (NQS38_06410) | - | 1354389..1355015 (+) | 627 | WP_016723979.1 | DUF2889 domain-containing protein | - |
| NQS38_RS06415 (NQS38_06415) | sucC | 1355082..1356248 (+) | 1167 | WP_011000513.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| NQS38_RS06420 (NQS38_06420) | sucD | 1356333..1357214 (+) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| NQS38_RS06425 (NQS38_06425) | - | 1357364..1358062 (+) | 699 | WP_021155808.1 | TerC family protein | - |
| NQS38_RS06430 (NQS38_06430) | pilA | 1358256..1358777 (+) | 522 | WP_011000516.1 | pilin | Machinery gene |
| NQS38_RS06435 (NQS38_06435) | pilA | 1359044..1359553 (+) | 510 | WP_016723977.1 | pilin | Machinery gene |
| NQS38_RS06440 (NQS38_06440) | - | 1359636..1361369 (+) | 1734 | WP_016723976.1 | PglL family O-oligosaccharyltransferase | - |
| NQS38_RS06445 (NQS38_06445) | moaC | 1361597..1362073 (-) | 477 | WP_016723975.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17844.54 Da Isoelectric Point: 10.0311
>NTDB_id=730047 NQS38_RS06430 WP_011000516.1 1358256..1358777(+) (pilA) [Ralstonia pseudosolanacearum strain Gj707]
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFGNLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
Nucleotide
Download Length: 522 bp
>NTDB_id=730047 NQS38_RS06430 WP_011000516.1 1358256..1358777(+) (pilA) [Ralstonia pseudosolanacearum strain Gj707]
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATCGGGATTTTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATATTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATCGGGATTTTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTATTGACCCCATATTCCGGCAGTTCGTCAGTATTTGGCAATTTGCAGGCAGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.705 |
100 |
0.526 |
| pilA2 | Legionella pneumophila str. Paris |
44.848 |
95.376 |
0.428 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.242 |
95.376 |
0.422 |
| comP | Acinetobacter baylyi ADP1 |
39.773 |
100 |
0.405 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
35.938 |
100 |
0.399 |