Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FOY93_RS21715 Genome accession   NZ_AP019634
Coordinates   4491479..4492999 (+) Length   506 a.a.
NCBI ID   WP_143345659.1    Uniprot ID   -
Organism   Enterobacter sp. 18A13     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4486479..4497999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOY93_RS21695 (ECC18A13_041840) ilvE 4488045..4488974 (-) 930 WP_127732610.1 branched-chain-amino-acid transaminase -
  FOY93_RS21700 (ECC18A13_041850) ilvM 4488993..4489256 (-) 264 WP_059354681.1 acetolactate synthase 2 small subunit -
  FOY93_RS21705 (ECC18A13_041860) ilvG 4489253..4490899 (-) 1647 WP_143345658.1 acetolactate synthase 2 catalytic subunit -
  FOY93_RS23630 ilvX 4490902..4490952 (-) 51 WP_166792073.1 peptide IlvX -
  FOY93_RS21710 ilvL 4491039..4491137 (-) 99 WP_001311244.1 ilv operon leader peptide -
  FOY93_RS21715 (ECC18A13_041870) comM 4491479..4492999 (+) 1521 WP_143345659.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FOY93_RS21720 (ECC18A13_041880) - 4493031..4493369 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  FOY93_RS21725 (ECC18A13_041890) hdfR 4493488..4494309 (+) 822 WP_143345660.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55016.91 Da        Isoelectric Point: 6.8203

>NTDB_id=72988 FOY93_RS21715 WP_143345659.1 4491479..4492999(+) (comM) [Enterobacter sp. 18A13]
MSLSVVYTRAALGVKAPLVSVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLINEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVMTDVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=72988 FOY93_RS21715 WP_143345659.1 4491479..4492999(+) (comM) [Enterobacter sp. 18A13]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTGTTTCAGTTGAGGTTCATTTGAGTAA
TGGGCTACCCGGGCTCACGCTTGTCGGCTTACCTGAAACGACGGTTAAAGAGGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCTGCGAAGAAGATCACCATCAACCTTGCTCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCAATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACAAGGCTAGGCTCGTATGAGTTCGT
GGGTGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCAGGAGCGCTGGAGGCCATACGTGCCGGGC
GGCAAATCATTGTCGCAAATGAAAATGCATCAGAAGTGAGTCTTATCAACGAGAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAGCCGGAGGAGTGTGACGATGTTATGACCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGGCACAATCTTC
TGTTGATTGGTCCACCAGGTACGGGGAAAACGATGCTGGCGAGCAGGTTGAGTGGATTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCACATCATAGCGCTTCACTGACCGCAATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGAGAGATCTCACTGGCCC
ATAATGGAATTCTATTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCGGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTTGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCTCCGCCGGGTCTGCTCAGGCAGACGGGTATCACGGGT
GAAAGCTCAGCTGATGTACGCGAGCGGGTGATTGCGGCCCAGACGCGACAGTATGCTCGTCAGAACAGGCTAAATGCCCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCCCTTAACAGTGAGGATGCGGGATGGCTTGAGGAGACGTTGACGCGCT
TTGGGCTGTCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.35

100

0.587
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Legionella pneumophila str. Paris

50.503

98.221

0.496
  comM Legionella pneumophila strain ERS1305867

50.503

98.221

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441

Multiple sequence alignment