Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NYR53_RS34180 Genome accession   NZ_CP104467
Coordinates   7616747..7617229 (-) Length   160 a.a.
NCBI ID   WP_261303384.1    Uniprot ID   -
Organism   Paenibacillus andongensis strain SS4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7611747..7622229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR53_RS34150 rplI 7612275..7612724 (-) 450 WP_056838752.1 50S ribosomal protein L9 -
  NYR53_RS34155 - 7612721..7614691 (-) 1971 WP_261303381.1 DHH family phosphoesterase -
  NYR53_RS34160 - 7614710..7615624 (-) 915 WP_261303382.1 YybS family protein -
  NYR53_RS34165 - 7615631..7615942 (-) 312 WP_029196137.1 MazG-like family protein -
  NYR53_RS34170 - 7616016..7616354 (-) 339 WP_261303383.1 cupin domain-containing protein -
  NYR53_RS34175 rpsR 7616436..7616723 (-) 288 WP_029196139.1 30S ribosomal protein S18 -
  NYR53_RS34180 ssbA 7616747..7617229 (-) 483 WP_261303384.1 single-stranded DNA-binding protein Machinery gene
  NYR53_RS34185 rpsF 7617264..7617551 (-) 288 WP_029196141.1 30S ribosomal protein S6 -
  NYR53_RS34190 - 7617793..7617984 (+) 192 WP_261303385.1 YjzC family protein -
  NYR53_RS34195 - 7618011..7618283 (+) 273 WP_173185084.1 hypothetical protein -
  NYR53_RS34200 - 7618350..7619045 (-) 696 WP_261306616.1 response regulator transcription factor -
  NYR53_RS34205 - 7619063..7620490 (-) 1428 WP_261303386.1 HAMP domain-containing sensor histidine kinase -
  NYR53_RS34210 - 7620503..7621255 (-) 753 WP_261303387.1 ABC transporter permease -
  NYR53_RS34215 - 7621242..7621967 (-) 726 WP_261303388.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17633.39 Da        Isoelectric Point: 4.8369

>NTDB_id=729777 NYR53_RS34180 WP_261303384.1 7616747..7617229(-) (ssbA) [Paenibacillus andongensis strain SS4]
MLNRVILIGRLTKDPELRYTPAGVAVTQFTLAVDRPFTNSQSKEREADFINIVTWRQLAETCANYLRKGRLTAVEGRIQV
RNYDNNEGKRVYVTEVIADNVRFLESSNSGNREEGGSSNANASYGGGSGSGNRGGGSREQQDPFIDDGKPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=729777 NYR53_RS34180 WP_261303384.1 7616747..7617229(-) (ssbA) [Paenibacillus andongensis strain SS4]
ATGTTGAACCGTGTTATTCTTATCGGTCGATTGACCAAAGATCCAGAACTTCGTTATACACCAGCTGGCGTAGCTGTTAC
ACAATTTACACTTGCAGTAGACCGCCCTTTCACGAATTCACAGTCGAAAGAACGGGAAGCGGACTTTATCAATATCGTTA
CGTGGAGGCAGCTTGCTGAAACATGCGCGAACTATTTGCGTAAAGGTCGTTTAACAGCAGTGGAAGGACGTATTCAGGTA
CGGAATTACGACAACAATGAGGGCAAGCGCGTTTATGTGACCGAAGTTATTGCCGATAATGTACGTTTCCTTGAATCCAG
CAACAGCGGTAATCGCGAAGAAGGCGGATCGTCTAACGCAAACGCAAGCTACGGCGGCGGAAGCGGCAGTGGCAATCGTG
GCGGTGGATCGCGCGAACAGCAGGATCCTTTCATAGATGACGGAAAACCGATCGATATTTCCGATGATGACTTGCCATTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.225

100

0.619
  ssb Latilactobacillus sakei subsp. sakei 23K

49.708

100

0.531
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.048

65.625

0.388
  ssb Neisseria meningitidis MC58

35.838

100

0.387
  ssb Neisseria gonorrhoeae MS11

33.333

100

0.369