Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N4562_RS08210 Genome accession   NZ_CP104396
Coordinates   1631290..1632372 (-) Length   360 a.a.
NCBI ID   WP_260903377.1    Uniprot ID   A0A9Q9J8E2
Organism   Ligilactobacillus agilis strain AM_LB6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1626290..1637372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4562_RS08195 (N4562_08195) - 1627222..1627368 (-) 147 WP_089145026.1 teichoic acid D-Ala incorporation-associated protein DltX -
  N4562_RS08200 (N4562_08200) - 1627537..1629399 (-) 1863 WP_260903374.1 monovalent cation:proton antiporter family protein -
  N4562_RS08205 (N4562_08205) rny 1629550..1631115 (-) 1566 WP_089145028.1 ribonuclease Y -
  N4562_RS08210 (N4562_08210) recA 1631290..1632372 (-) 1083 WP_260903377.1 recombinase RecA Machinery gene
  N4562_RS08215 (N4562_08215) cinA 1632446..1633696 (-) 1251 WP_260903379.1 competence/damage-inducible protein A Machinery gene
  N4562_RS08220 (N4562_08220) pgsA 1633832..1634425 (-) 594 WP_056976996.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N4562_RS08225 (N4562_08225) - 1634441..1635364 (-) 924 WP_172576561.1 helix-turn-helix domain-containing protein -
  N4562_RS08230 (N4562_08230) ymfI 1635476..1636201 (-) 726 WP_101811123.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38954.53 Da        Isoelectric Point: 5.4034

>NTDB_id=729529 N4562_RS08210 WP_260903377.1 1631290..1632372(-) (recA) [Ligilactobacillus agilis strain AM_LB6]
MVADERKAALDVALKKIEKNFGKGSIMRMGEKADTQISTVSSGSLALDEALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKNGGTAAYIDAENALDPAYATALGVDIDQLLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEVRRAEQIKDGSEIIGN
RVKIKVVKNKVAPPFRIAEVDIMYGEGISKTGELIDMAVEKDIINKSGSWFSYGEERIGQGRENAKKYLLEHSEMMNEIY
LKVRKAYGIADADEEAQLELKLGDKQDKPDAKEKTAKDKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=729529 N4562_RS08210 WP_260903377.1 1631290..1632372(-) (recA) [Ligilactobacillus agilis strain AM_LB6]
GTGGTAGCTGATGAAAGAAAAGCTGCGTTAGACGTAGCTTTAAAAAAAATAGAGAAGAATTTCGGTAAGGGTTCAATTAT
GCGAATGGGTGAAAAAGCTGATACGCAAATTTCAACCGTATCTAGTGGTTCTTTAGCCTTGGATGAAGCCTTAGGAGTCG
GTGGTTATCCTCGAGGAAGAATTGTTGAAATTTATGGGCCTGAAAGTTCTGGTAAAACAACGGTAGCCTTGCACGCGGTG
GCTGAAGTTCAAAAAAATGGTGGGACTGCCGCTTATATTGATGCTGAAAACGCACTTGACCCAGCTTATGCAACTGCTCT
AGGGGTAGATATTGATCAACTCTTGTTATCACAACCAGATACGGGGGAACAAGGGCTAGAAATTGCCGATGCCTTGGTTT
CTTCCGGTGCAATTGACATTGTGGTAGTTGACTCAGTAGCTGCCTTGGTACCTCGGGCCGAAATTGAGGGAGAAATGGGT
GATTCCCACGTAGGGCTGCAAGCACGATTAATGTCGCAAGCATTGCGCAAGCTATCCGGGACTATCAATAAAACTAAGAC
CATCGCCTTGTTTATTAACCAAATTCGTGAAAAAGTGGGGATTATGTTTGGTAACCCTGAAACAACTCCAGGGGGAAGGG
CTTTAAAATTTTATTCCACTATTCGTCTAGAGGTAAGACGGGCTGAACAAATTAAGGATGGTTCTGAAATTATTGGGAAC
CGGGTTAAGATAAAGGTTGTCAAAAATAAGGTTGCGCCTCCATTCAGAATTGCCGAAGTTGACATCATGTATGGGGAAGG
TATCTCCAAGACTGGTGAATTAATTGACATGGCCGTCGAAAAAGACATTATCAATAAGAGTGGGTCTTGGTTCTCTTATG
GCGAGGAACGAATTGGTCAAGGCCGTGAAAATGCTAAGAAATACCTCTTAGAACATTCAGAAATGATGAATGAGATTTAT
CTCAAAGTCAGAAAGGCATATGGGATTGCTGATGCCGATGAAGAGGCACAATTAGAATTGAAACTTGGCGATAAGCAAGA
CAAGCCGGATGCTAAGGAAAAGACGGCCAAAGATAAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.567

93.056

0.806
  recA Bacillus subtilis subsp. subtilis str. 168

77.231

90.278

0.697
  recA Streptococcus mutans UA159

68.555

98.056

0.672
  recA Streptococcus pneumoniae TIGR4

68.272

98.056

0.669
  recA Streptococcus pneumoniae R6

68.272

98.056

0.669
  recA Streptococcus pneumoniae Rx1

68.272

98.056

0.669
  recA Streptococcus pneumoniae D39

68.272

98.056

0.669
  recA Streptococcus pyogenes NZ131

70.997

91.944

0.653
  recA Lactococcus lactis subsp. cremoris KW2

69.94

93.333

0.653
  recA Streptococcus mitis NCTC 12261

69.436

93.611

0.65
  recA Streptococcus mitis SK321

69.436

93.611

0.65
  recA Neisseria gonorrhoeae strain FA1090

63.83

91.389

0.583
  recA Neisseria gonorrhoeae MS11

63.83

91.389

0.583
  recA Neisseria gonorrhoeae MS11

63.83

91.389

0.583
  recA Glaesserella parasuis strain SC1401

58

97.222

0.564
  recA Ralstonia pseudosolanacearum GMI1000

64.537

86.944

0.561
  recA Acinetobacter baylyi ADP1

57.429

97.222

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

90.278

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

91.111

0.553
  recA Acinetobacter baumannii D1279779

57.184

96.667

0.553
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.245

90.833

0.547
  recA Helicobacter pylori 26695

59.451

91.111

0.542
  recA Helicobacter pylori strain NCTC11637

59.451

91.111

0.542
  recA Pseudomonas stutzeri DSM 10701

57.958

92.5

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.317

89.444

0.531
  recA Vibrio cholerae strain A1552

59.317

89.444

0.531