Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N4562_RS08215 Genome accession   NZ_CP104396
Coordinates   1632446..1633696 (-) Length   416 a.a.
NCBI ID   WP_260903379.1    Uniprot ID   A0A9Q9J3M6
Organism   Ligilactobacillus agilis strain AM_LB6     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1627446..1638696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4562_RS08200 (N4562_08200) - 1627537..1629399 (-) 1863 WP_260903374.1 monovalent cation:proton antiporter family protein -
  N4562_RS08205 (N4562_08205) rny 1629550..1631115 (-) 1566 WP_089145028.1 ribonuclease Y -
  N4562_RS08210 (N4562_08210) recA 1631290..1632372 (-) 1083 WP_260903377.1 recombinase RecA Machinery gene
  N4562_RS08215 (N4562_08215) cinA 1632446..1633696 (-) 1251 WP_260903379.1 competence/damage-inducible protein A Machinery gene
  N4562_RS08220 (N4562_08220) pgsA 1633832..1634425 (-) 594 WP_056976996.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N4562_RS08225 (N4562_08225) - 1634441..1635364 (-) 924 WP_172576561.1 helix-turn-helix domain-containing protein -
  N4562_RS08230 (N4562_08230) ymfI 1635476..1636201 (-) 726 WP_101811123.1 elongation factor P 5-aminopentanone reductase -
  N4562_RS08235 (N4562_08235) yfmH 1636209..1637504 (-) 1296 WP_260903382.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45231.94 Da        Isoelectric Point: 6.0760

>NTDB_id=729530 N4562_RS08215 WP_260903379.1 1632446..1633696(-) (cinA) [Ligilactobacillus agilis strain AM_LB6]
MHAEIIAVGTEILLGQIIDTNTRLVGQVLADLGIDVYYQTVVGDNEVRMRAAIDLAAKRSDLVILTGGLGPTKDDLTKQV
VAAYLGKQLVEDEAAMLKIKRHFEISQRKMTANNRLQALYIEGSKPLANETGLAVGDFYQAEQGPDFMLLPGPPSELRPM
LFKVALPLLKQAYRQDQLLSSRVLRFFGIGESQLASQLDDLIENQTNPTIAPYAKDNEVTLRLTASAKNEQEAQALLDGL
ESKIAKRCGQYLYGYGDDNSLAQVVMTKLIEKHLTITAAESLTGGQLQAALTSIPGASQAFMGGFVTYANYAKEKLLAIP
AEVIDKHGSVSEQTAILMAEQAKQKLGADVGVSLTGVAGPDSLEGQPVGTVWIGIAYRNKAGYAQKFHFPRQRKYVQARA
VLTALDLVRKELLSEN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=729530 N4562_RS08215 WP_260903379.1 1632446..1633696(-) (cinA) [Ligilactobacillus agilis strain AM_LB6]
ATGCATGCAGAAATAATTGCAGTAGGAACAGAAATATTATTAGGCCAAATTATTGATACTAATACAAGGTTAGTCGGTCA
GGTTTTAGCCGATTTGGGGATAGATGTCTATTACCAAACCGTGGTTGGCGATAACGAAGTTAGGATGAGAGCTGCGATTG
ATTTGGCGGCTAAACGAAGTGACCTAGTGATCCTTACTGGGGGCTTGGGACCAACTAAAGACGATTTGACTAAGCAAGTT
GTTGCAGCTTATCTAGGTAAGCAGTTAGTTGAAGATGAAGCGGCCATGCTTAAGATTAAGCGTCACTTTGAAATTAGTCA
GCGCAAGATGACGGCTAACAATCGCTTGCAGGCCCTTTATATTGAAGGATCCAAGCCGCTTGCAAACGAAACGGGGCTAG
CCGTGGGTGACTTTTATCAAGCTGAGCAGGGACCTGATTTTATGTTGCTACCGGGACCGCCAAGTGAGTTAAGACCAATG
TTGTTTAAGGTCGCTTTACCCTTGCTAAAACAAGCTTACCGACAAGACCAACTTTTAAGTTCAAGGGTACTACGTTTCTT
TGGTATTGGGGAATCGCAATTAGCTAGCCAGTTGGATGATTTAATTGAAAATCAAACTAACCCAACGATAGCACCTTATG
CTAAGGATAATGAGGTTACTTTGCGGTTAACGGCCAGTGCTAAAAACGAACAAGAAGCGCAGGCCTTACTTGATGGGCTA
GAAAGTAAAATTGCTAAGCGCTGTGGTCAATATTTATATGGCTATGGTGATGATAATAGTTTAGCCCAAGTCGTAATGAC
TAAGTTAATAGAAAAACACCTAACCATAACAGCGGCAGAAAGTCTAACAGGTGGTCAACTTCAAGCGGCGCTAACAAGTA
TTCCCGGTGCTTCGCAAGCCTTTATGGGAGGCTTTGTCACCTATGCAAACTATGCTAAGGAAAAATTGTTAGCTATTCCA
GCGGAGGTCATTGATAAGCATGGGAGCGTTAGTGAACAGACTGCGATTTTAATGGCTGAGCAAGCTAAACAAAAGCTAGG
AGCCGATGTGGGGGTTAGTTTGACTGGGGTAGCTGGTCCTGATAGCTTAGAGGGGCAACCGGTGGGGACCGTTTGGATTG
GAATTGCTTATCGAAATAAAGCTGGTTATGCCCAAAAATTCCATTTCCCAAGGCAGAGAAAGTATGTGCAAGCAAGAGCG
GTGCTGACTGCCTTAGATTTAGTCAGAAAAGAATTGTTAAGCGAAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52

100

0.531
  cinA Streptococcus mitis NCTC 12261

51.765

100

0.529
  cinA Streptococcus pneumoniae TIGR4

51.651

100

0.526
  cinA Streptococcus pneumoniae R6

51.415

100

0.524
  cinA Streptococcus pneumoniae Rx1

51.415

100

0.524
  cinA Streptococcus mutans UA159

52.153

100

0.524
  cinA Streptococcus pneumoniae D39

51.179

100

0.522
  cinA Bacillus subtilis subsp. subtilis str. 168

47.561

98.558

0.469
  cinA Streptococcus suis isolate S10

43.943

100

0.445