Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   N4562_RS08320 Genome accession   NZ_CP104396
Coordinates   1652926..1654734 (-) Length   602 a.a.
NCBI ID   WP_260903393.1    Uniprot ID   A0A9Q9MSJ0
Organism   Ligilactobacillus agilis strain AM_LB6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647926..1659734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4562_RS08295 (N4562_08295) mgtE 1648337..1649701 (-) 1365 WP_094130307.1 magnesium transporter -
  N4562_RS08300 (N4562_08300) - 1649717..1650610 (-) 894 WP_170091372.1 RluA family pseudouridine synthase -
  N4562_RS08305 (N4562_08305) - 1650600..1651418 (-) 819 WP_056976982.1 NAD kinase -
  N4562_RS08310 (N4562_08310) - 1651432..1652073 (-) 642 WP_089144115.1 GTP pyrophosphokinase family protein -
  N4562_RS08315 (N4562_08315) - 1652238..1652876 (+) 639 WP_225435949.1 DsbA family protein -
  N4562_RS08320 (N4562_08320) pepF 1652926..1654734 (-) 1809 WP_260903393.1 oligoendopeptidase F Regulator
  N4562_RS08325 (N4562_08325) - 1654778..1655695 (-) 918 WP_260903395.1 competence protein CoiA -
  N4562_RS08330 (N4562_08330) - 1655869..1656627 (-) 759 WP_260903398.1 adaptor protein MecA -
  N4562_RS08335 (N4562_08335) spxA 1656744..1657145 (-) 402 WP_050612525.1 transcriptional regulator SpxA -
  N4562_RS08340 (N4562_08340) - 1657494..1658054 (+) 561 WP_094130322.1 M15 family metallopeptidase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68720.72 Da        Isoelectric Point: 5.1343

>NTDB_id=729531 N4562_RS08320 WP_260903393.1 1652926..1654734(-) (pepF) [Ligilactobacillus agilis strain AM_LB6]
MTEVKKLPQRKEVPVELTWDLELIFANSGEFDTAVTELEQQATTFLTYQGQVGQSAQTLLTALEAWLDLDRALEKIYVYA
SMKNDQDTKNAEYQALFTRVQKLVAEVSAKIAWFEPELLALSEETVATYLQVEPKLQQYQHLLEVLLAKKAHILSDKEEA
LLAGASDILGAPENIFGVLNNADFKFAQVSDEAGNKVQLSQGLYGKLLESVNREVRKEAFEKLYLVYHQFRHTLATTLAT
HVRMHNFEAKLRGYNSAQERALASNSIPVKVYTTLLEQVEQHLPLLHRYVELRKKVLGLTELHMYDLYTPLTGKANLAYT
YEEAKQESLKALAVLGDDYLGHVKEAYASRWIDVVENEGKRSGAYSSGVYDTAPYILLNWQDNLDNLFTLVHEMGHSMHT
YLTTHNQPYQYGDYPIFLAEIASTTNENLLTQYLLETQKDPQVQAYVLNHYLDGFKGTVFRQAQFAQFELWLHEQEASGQ
ALTAEKLADYYGKLNQHYYGSAVVNDQQIAYEWARIPHFYYNFYVYQYATGFAAATTLSQNILSKDPAKLTAYLDYLKAG
SSNYPLEVMKQAGVNMEESAYLQEAFKVFEKRLNQLEGLLLK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=729531 N4562_RS08320 WP_260903393.1 1652926..1654734(-) (pepF) [Ligilactobacillus agilis strain AM_LB6]
ATGACTGAGGTAAAAAAATTACCCCAAAGAAAAGAAGTTCCCGTAGAATTAACTTGGGATTTAGAGTTGATTTTTGCAAA
TAGCGGTGAATTTGATACCGCTGTTACGGAGTTAGAGCAACAAGCAACAACTTTCTTAACCTATCAAGGCCAAGTAGGAC
AAAGTGCCCAAACGTTATTGACGGCTTTAGAAGCGTGGTTAGACTTAGATCGTGCCTTAGAGAAAATCTATGTCTATGCT
AGCATGAAAAATGATCAAGATACTAAAAACGCTGAATATCAAGCGTTATTCACACGGGTTCAAAAGTTAGTGGCGGAAGT
CTCCGCTAAGATAGCTTGGTTTGAACCAGAATTGCTGGCCTTATCCGAAGAAACGGTTGCAACTTACTTACAGGTTGAGC
CTAAGTTACAGCAGTATCAACATTTATTGGAGGTACTATTAGCTAAAAAAGCCCATATTTTAAGCGACAAGGAAGAAGCC
TTGTTAGCGGGAGCTAGTGATATTTTAGGAGCGCCCGAAAATATTTTTGGGGTACTAAACAATGCCGACTTTAAGTTTGC
GCAAGTTAGTGATGAAGCGGGGAATAAAGTTCAACTATCACAGGGACTTTATGGAAAATTATTAGAATCCGTAAACCGGG
AAGTAAGAAAAGAGGCCTTTGAAAAGCTTTACCTAGTCTATCATCAATTTAGACACACCCTGGCTACTACATTAGCTACC
CACGTGCGGATGCATAATTTTGAAGCTAAATTACGTGGTTATAATTCAGCCCAAGAACGAGCCTTGGCAAGTAATTCCAT
TCCGGTTAAAGTATACACCACTTTACTGGAACAGGTTGAACAACACCTACCATTGTTACACCGATATGTTGAATTGAGAA
AAAAGGTCTTAGGCCTAACCGAATTGCATATGTATGATTTGTATACTCCCCTTACAGGTAAAGCCAACTTAGCTTATACC
TACGAGGAAGCTAAGCAAGAAAGTTTAAAGGCGCTAGCGGTACTTGGTGACGACTATTTAGGGCACGTGAAAGAAGCCTA
TGCTAGTCGGTGGATTGATGTGGTTGAAAACGAAGGTAAGAGAAGTGGTGCTTACTCTTCCGGGGTATATGATACTGCAC
CGTATATTTTATTAAACTGGCAAGATAATTTAGATAATTTATTTACACTTGTACATGAAATGGGTCACAGTATGCACACT
TACCTTACAACGCATAACCAACCTTATCAGTACGGAGATTATCCCATCTTTTTAGCAGAAATTGCTTCAACCACTAACGA
GAACTTGCTAACCCAATATTTGTTGGAGACGCAAAAAGATCCGCAAGTACAAGCTTATGTTTTAAATCATTATTTAGATG
GGTTTAAGGGAACCGTGTTTAGACAAGCTCAGTTTGCCCAATTTGAGTTATGGCTACATGAACAAGAGGCTAGTGGCCAG
GCATTAACAGCCGAAAAGTTAGCCGATTATTATGGTAAATTAAACCAACATTATTATGGTTCGGCCGTGGTTAATGACCA
GCAAATTGCCTACGAATGGGCCCGGATTCCTCATTTTTACTATAATTTCTATGTTTATCAATATGCGACGGGATTTGCAG
CGGCAACAACCCTTTCCCAAAATATTTTAAGCAAAGATCCAGCTAAGTTAACTGCTTACCTAGACTATCTTAAAGCGGGT
AGTTCTAACTATCCACTTGAAGTTATGAAACAAGCTGGGGTAAATATGGAAGAAAGTGCCTACCTGCAAGAGGCGTTTAA
AGTATTTGAAAAGCGGTTGAATCAATTAGAGGGTTTATTACTCAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.199

98.671

0.525