Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N4269_RS11995 Genome accession   NZ_CP104356
Coordinates   2645435..2645968 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain PNUSAV001141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2640435..2650968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4269_RS11975 (N4269_11975) - 2640890..2641207 (-) 318 WP_046127163.1 MSHA biogenesis protein MshK -
  N4269_RS11980 (N4269_11980) gspM 2641200..2641850 (-) 651 WP_000835144.1 type II secretion system protein GspM -
  N4269_RS11985 (N4269_11985) - 2641847..2643286 (-) 1440 WP_134986871.1 PilN domain-containing protein -
  N4269_RS11990 (N4269_11990) csrD 2643299..2645311 (-) 2013 WP_069216271.1 RNase E specificity factor CsrD -
  N4269_RS11995 (N4269_11995) ssb 2645435..2645968 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  N4269_RS12000 (N4269_12000) qstR 2646260..2646904 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  N4269_RS12005 (N4269_12005) galU 2647077..2647949 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  N4269_RS12010 (N4269_12010) uvrA 2648105..2650927 (+) 2823 WP_069647700.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=729067 N4269_RS11995 WP_000168287.1 2645435..2645968(-) (ssb) [Vibrio cholerae strain PNUSAV001141]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=729067 N4269_RS11995 WP_000168287.1 2645435..2645968(-) (ssb) [Vibrio cholerae strain PNUSAV001141]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACTTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTCACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGGATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486