Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   N4269_RS12000 Genome accession   NZ_CP104356
Coordinates   2646260..2646904 (+) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain PNUSAV001141     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2641260..2651904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4269_RS11985 (N4269_11985) - 2641847..2643286 (-) 1440 WP_134986871.1 PilN domain-containing protein -
  N4269_RS11990 (N4269_11990) csrD 2643299..2645311 (-) 2013 WP_069216271.1 RNase E specificity factor CsrD -
  N4269_RS11995 (N4269_11995) ssb 2645435..2645968 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  N4269_RS12000 (N4269_12000) qstR 2646260..2646904 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  N4269_RS12005 (N4269_12005) galU 2647077..2647949 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  N4269_RS12010 (N4269_12010) uvrA 2648105..2650927 (+) 2823 WP_069647700.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=729068 N4269_RS12000 WP_001188318.1 2646260..2646904(+) (qstR) [Vibrio cholerae strain PNUSAV001141]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=729068 N4269_RS12000 WP_001188318.1 2646260..2646904(+) (qstR) [Vibrio cholerae strain PNUSAV001141]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCTGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTAAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519