Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N4269_RS00100 Genome accession   NZ_CP104356
Coordinates   22701..24224 (+) Length   507 a.a.
NCBI ID   WP_134986743.1    Uniprot ID   -
Organism   Vibrio cholerae strain PNUSAV001141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17701..29224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4269_RS00085 (N4269_00085) ilvE 19274..20212 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  N4269_RS00090 (N4269_00090) ilvM 20224..20508 (-) 285 WP_001190200.1 acetolactate synthase 2 small subunit -
  N4269_RS00095 (N4269_00095) ilvG 20520..22166 (-) 1647 WP_134986746.1 acetolactate synthase 2 catalytic subunit -
  N4269_RS00100 (N4269_00100) comM 22701..24224 (+) 1524 WP_134986743.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N4269_RS00105 (N4269_00105) - 24314..25198 (+) 885 WP_033933027.1 acyltransferase -
  N4269_RS00110 (N4269_00110) - 25276..25878 (-) 603 WP_000732281.1 thiol:disulfide interchange protein DsbA/DsbL -
  N4269_RS00115 (N4269_00115) - 25909..26895 (-) 987 WP_134987356.1 serine/threonine protein kinase -
  N4269_RS00120 (N4269_00120) ccoG 26943..28367 (-) 1425 WP_000076153.1 cytochrome c oxidase accessory protein CcoG -
  N4269_RS00125 (N4269_00125) - 28768..29034 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55018.05 Da        Isoelectric Point: 8.3637

>NTDB_id=729032 N4269_RS00100 WP_134986743.1 22701..24224(+) (comM) [Vibrio cholerae strain PNUSAV001141]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARNKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGSERHKSAQSL
LEVCADLCGQQTLSLFQSSASVQQVSHARDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARPHLAEALGYRAMDRLLKQLSAQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=729032 N4269_RS00100 WP_134986743.1 22701..24224(+) (comM) [Vibrio cholerae strain PNUSAV001141]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCTCCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACGGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCGCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAAATAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGTGAAATTCGTGGCGTGAAGGGCGTGTTGCCTGCCGCACTTGCGGCTAACCAAGTCGAGC
GCTGTTTGGTGGTGCCACACAGTAATGGCGATCAGGCGGCCTTGGTCGGGAGTGAAAGGCATAAATCGGCGCAAAGCTTA
CTCGAAGTGTGCGCGGACTTGTGTGGTCAGCAAACCCTATCTTTGTTTCAAAGTTCGGCCAGTGTGCAACAAGTAAGTCA
TGCGCGCGATCTGCAAGACATCATAGGTCAGCAGCAAGGGAAACGTGCCTTGGAAATCGCTGCAGCTGGCAATCACAACC
TGCTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCCTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACACAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTGGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGACTACTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTTGATTCACTGCGTGAACCGCTGGAA
TCGGGGGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCTGCACGCTTTCAATTGGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCACGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCAG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTCTAGAAAGCGCGCTGCATC
GCTTGGGTTTATCTATTCGGGCTTACCATCGCATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTCCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTCAGTGCGCAGAACGT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.211

100

0.992
  comM Vibrio campbellii strain DS40M4

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

67.258

100

0.673
  comM Glaesserella parasuis strain SC1401

64.062

100

0.647
  comM Legionella pneumophila str. Paris

50.605

97.83

0.495
  comM Legionella pneumophila strain ERS1305867

50.605

97.83

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.434