Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N4267_RS04745 Genome accession   NZ_CP104354
Coordinates   1012177..1012488 (+) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae strain PNUSAV001140     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1007177..1017488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4267_RS04730 (N4267_04730) lon 1007214..1009574 (+) 2361 WP_001047609.1 endopeptidase La -
  N4267_RS04735 (N4267_04735) - 1009758..1010030 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  N4267_RS04740 (N4267_04740) ppiD 1010183..1012042 (+) 1860 WP_134987212.1 peptidylprolyl isomerase -
  N4267_RS04745 (N4267_04745) comEA 1012177..1012488 (+) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  N4267_RS04750 (N4267_04750) cmk 1012671..1013348 (+) 678 WP_000094752.1 (d)CMP kinase -
  N4267_RS04755 (N4267_04755) rpsA 1013457..1015127 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  N4267_RS04760 (N4267_04760) ihfB 1015416..1015694 (+) 279 WP_000167341.1 integration host factor subunit beta -
  N4267_RS04765 (N4267_04765) - 1015833..1016114 (+) 282 WP_000691492.1 LapA family protein -
  N4267_RS04770 (N4267_04770) lapB 1016126..1017295 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=729001 N4267_RS04745 WP_001166105.1 1012177..1012488(+) (comEA) [Vibrio cholerae strain PNUSAV001140]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=729001 N4267_RS04745 WP_001166105.1 1012177..1012488(+) (comEA) [Vibrio cholerae strain PNUSAV001140]
ATGCAAATAAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATCAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437