Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N4J17_RS00020 Genome accession   NZ_CP104311
Coordinates   1222..2739 (+) Length   505 a.a.
NCBI ID   WP_198322528.1    Uniprot ID   -
Organism   Methylococcus capsulatus strain VKPM-B-12549 (GBS-15)     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..7739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4J17_RS00010 (N4J17_00010) glnK 362..700 (-) 339 WP_010961376.1 P-II family nitrogen regulator -
  N4J17_RS00015 (N4J17_00015) - 962..1213 (+) 252 WP_198322529.1 accessory factor UbiK family protein -
  N4J17_RS00020 (N4J17_00020) comM 1222..2739 (+) 1518 WP_198322528.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N4J17_RS00025 (N4J17_00025) rep 2736..4739 (+) 2004 WP_198322527.1 DNA helicase Rep -
  N4J17_RS00040 (N4J17_00040) - 5156..6133 (+) 978 WP_198322526.1 IS481 family transposase -
  N4J17_RS00045 (N4J17_00045) - 6478..6960 (-) 483 WP_198322525.1 hypothetical protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54465.52 Da        Isoelectric Point: 7.1351

>NTDB_id=728562 N4J17_RS00020 WP_198322528.1 1222..2739(+) (comM) [Methylococcus capsulatus strain VKPM-B-12549 (GBS-15)]
MAIAIVHSRACQGIEAPEVTVEVHIAPGLPNLTIVGLPETAVRESKDRVRSALVTTGFEFPAQRITVNLAPADLPKEGGR
FDLPIALGILAASKQLRTEQLVELECVGELALTGELRPVPGALPVALQSRRAERSLIVPWDNAGEAALVPGAFVLPARHL
LDVCAHLDGSRLLAAVESNTEAIAAREELPDLSEVRGQFQAKRALEIAAAGRHNLLMLGPPGTGKSMLASRMPGILPDLT
ETEALETAAVASVSGMPFDPAVWRRPPYRAPHHTASAPALVGGGSSPKPGEISLAHNGVLFLDELPEFDRRVLEVLREPL
ESGAITISRATQRLDFPARFQLVAAMNPCPCGYLGDASGRCHCSAEQVARYRARISGPLLDRIDMHLEVPRQDPATLLDG
APRNEETSAQVRCRVIAARERALRRSGQPNALLTPRQIERHCIPDSAGRALLEQAMTRLNLSHRAYHRILKLARTIADLD
DSEAIAANHIGEAIGYRRLDRSTAR

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=728562 N4J17_RS00020 WP_198322528.1 1222..2739(+) (comM) [Methylococcus capsulatus strain VKPM-B-12549 (GBS-15)]
ATGGCGATCGCCATCGTCCACAGCCGCGCCTGCCAGGGCATCGAGGCACCGGAGGTGACCGTGGAGGTCCACATCGCGCC
GGGGCTGCCCAACCTCACCATCGTGGGGCTGCCGGAAACCGCCGTGCGCGAGAGCAAGGACCGGGTGCGCAGCGCTCTCG
TCACCACCGGCTTCGAATTTCCCGCCCAACGCATCACCGTGAATCTGGCTCCAGCCGATCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGCCCATCGCCCTCGGCATCCTGGCCGCTTCGAAGCAGCTCCGCACCGAGCAACTGGTAGAGCTGGAGTGTGT
CGGCGAGCTGGCGCTCACCGGTGAGCTGCGGCCGGTCCCGGGAGCCTTGCCCGTCGCCCTCCAGTCACGCCGTGCGGAGC
GCAGCCTGATCGTACCCTGGGACAATGCCGGCGAGGCGGCTCTGGTCCCCGGTGCCTTTGTGCTTCCTGCCCGGCATCTG
CTGGACGTCTGCGCCCATCTGGACGGCAGCCGCCTCCTCGCCGCCGTCGAATCAAATACCGAAGCGATAGCTGCCCGCGA
GGAGCTGCCCGATCTTTCCGAAGTCCGCGGCCAGTTCCAGGCCAAGCGCGCCTTGGAAATTGCCGCCGCCGGTCGCCACA
ACCTGCTGATGTTGGGCCCCCCTGGCACCGGCAAATCCATGCTGGCCTCGCGCATGCCCGGCATCCTGCCCGACCTGACC
GAGACGGAAGCATTGGAAACCGCAGCGGTCGCCTCGGTCAGCGGAATGCCCTTCGACCCGGCAGTTTGGCGCCGACCGCC
GTACCGCGCTCCTCATCACACCGCCTCCGCACCAGCGCTGGTAGGCGGCGGAAGCAGCCCCAAACCCGGGGAGATTTCGC
TGGCCCATAACGGCGTGCTGTTCCTGGACGAGTTGCCGGAATTCGACCGGCGGGTGCTGGAGGTCCTGCGCGAACCCCTG
GAGAGCGGCGCCATCACCATCTCCCGCGCCACCCAACGACTGGACTTCCCCGCCCGTTTCCAGCTCGTCGCCGCGATGAA
TCCCTGCCCCTGCGGCTACCTGGGTGATGCTTCCGGGCGCTGCCATTGCTCGGCCGAACAGGTGGCCCGCTACCGTGCAC
GCATCTCCGGACCTCTCCTGGACCGGATCGACATGCACCTCGAGGTGCCCCGCCAGGACCCGGCCACGCTTCTGGACGGC
GCGCCCCGGAACGAGGAGACCAGCGCTCAGGTCCGGTGCCGCGTGATTGCCGCCCGCGAGCGGGCGCTCCGCCGCAGCGG
CCAGCCCAACGCCCTGCTCACGCCGCGTCAGATCGAGCGCCACTGCATCCCCGACAGCGCGGGACGCGCATTGTTGGAAC
AGGCCATGACACGGCTGAATCTCTCGCACCGCGCCTACCATCGCATTTTGAAGCTGGCCCGCACCATCGCCGATCTGGAC
GACAGCGAGGCAATCGCGGCCAACCACATCGGGGAAGCCATCGGCTACCGGCGTCTCGACCGCTCCACGGCCCGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.03

100

0.57
  comM Vibrio cholerae strain A1552

56.886

99.208

0.564
  comM Haemophilus influenzae Rd KW20

54.257

100

0.543
  comM Glaesserella parasuis strain SC1401

53.057

100

0.533
  comM Legionella pneumophila str. Paris

48.996

98.614

0.483
  comM Legionella pneumophila strain ERS1305867

48.996

98.614

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.129

100

0.471