Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   W01_RS00325 Genome accession   NZ_AP019547
Coordinates   69548..71044 (-) Length   498 a.a.
NCBI ID   WP_173051697.1    Uniprot ID   -
Organism   Candidatus Nitrotoga sp. AM1P     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 64548..76044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  W01_RS13975 - 65223..65495 (+) 273 WP_242006986.1 hypothetical protein -
  W01_RS00310 (W01_00550) - 65744..66493 (-) 750 WP_173051695.1 hypothetical protein -
  W01_RS00315 (W01_00560) - 66484..67026 (-) 543 WP_173051696.1 PEP-CTERM sorting domain-containing protein -
  W01_RS00320 (W01_00570) - 67945..69195 (+) 1251 WP_173051692.1 DDE-type integrase/transposase/recombinase -
  W01_RS00325 (W01_00580) comM 69548..71044 (-) 1497 WP_173051697.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  W01_RS00330 (W01_00590) - 71049..71288 (-) 240 WP_173051698.1 accessory factor UbiK family protein -
  W01_RS00335 (W01_00600) - 71456..72313 (-) 858 WP_173051699.1 sterol desaturase family protein -
  W01_RS00340 (W01_00610) thiO 72485..73573 (-) 1089 WP_173051700.1 glycine oxidase ThiO -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53693.65 Da        Isoelectric Point: 8.1789

>NTDB_id=72837 W01_RS00325 WP_173051697.1 69548..71044(-) (comM) [Candidatus Nitrotoga sp. AM1P]
MSLAVLYSRALSGMDAALVTVEVHLANGLPSFTIVGLPETEVKESKDRVRAALLTCQFEFPSRRITVNLAPADLPKESGR
FDLPIALGILAASGQIPSNRLAEYEFAGELALTGELRPIRGALAMTYHAASNGRAFILPEINAVEAALVEDAAVYPAQSL
LQVAAHLSGRSTLTRQIASAQPVMPDYPDMREVKGQGQAKRALEIAAAGGHSVLMCGPPGTGKSMLAARFPGILPQMTEA
EALESAAMQSLGGMFDVSRWKTRPYRSPHHTASAVAMVGGGSNPRPGEISIAMHGVLFLDELPEFERHVLEVLREPLESG
RITISRATRRADFRAQFQLLAAMNPCPCGYLGHYNGKCRCTPDQIARYRSKISGPLLDRIDIQIEVPAVPQETLLKQADG
ESNSDIQARVNVARQHALTRQNKPNAQLTVSEIDVLCAPDAQGAALLQQAITRLNLSARAYHRVLKVARTIADLAGSENI
LASHIAEAVQYRRMGRQG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=72837 W01_RS00325 WP_173051697.1 69548..71044(-) (comM) [Candidatus Nitrotoga sp. AM1P]
ATGAGCCTCGCGGTTTTATATAGCCGCGCCCTCTCCGGCATGGATGCCGCACTGGTCACGGTCGAGGTACATCTGGCCAA
CGGTCTACCCAGCTTCACCATTGTCGGCCTGCCGGAAACCGAAGTGAAAGAAAGTAAGGATCGCGTCCGTGCGGCCTTAC
TCACTTGCCAGTTTGAATTTCCCAGCCGCCGCATCACCGTTAATCTCGCGCCAGCCGACCTGCCCAAGGAAAGCGGACGT
TTTGATTTACCCATCGCGCTAGGCATTCTCGCCGCATCTGGACAAATACCCTCAAATCGCCTTGCCGAATATGAATTTGC
CGGTGAACTTGCGCTTACCGGCGAACTACGACCGATACGCGGCGCACTTGCAATGACCTATCACGCAGCATCCAACGGGC
GGGCATTTATTCTTCCCGAAATAAATGCTGTCGAAGCGGCGCTGGTAGAAGATGCAGCGGTGTATCCTGCGCAATCTTTG
TTGCAGGTAGCGGCGCATTTATCTGGCCGCTCTACACTCACCCGTCAAATCGCCAGTGCACAGCCTGTTATGCCAGACTA
TCCCGACATGCGCGAAGTGAAAGGTCAAGGGCAAGCCAAGCGCGCGCTTGAGATTGCCGCTGCTGGTGGTCATAGCGTAC
TGATGTGCGGTCCGCCCGGCACCGGTAAATCGATGCTGGCAGCGCGTTTCCCCGGCATCCTGCCGCAAATGACTGAAGCT
GAAGCATTGGAAAGTGCAGCCATGCAATCGTTAGGCGGCATGTTTGATGTAAGCCGCTGGAAAACAAGACCGTACCGATC
ACCGCACCACACCGCATCAGCTGTAGCTATGGTCGGCGGCGGCAGCAATCCGCGTCCCGGTGAAATCTCTATCGCAATGC
ACGGCGTGCTGTTCCTTGATGAATTGCCGGAATTTGAGCGCCATGTACTGGAAGTGCTGCGCGAGCCACTGGAGAGTGGA
CGCATCACCATCTCGCGCGCTACGCGCCGCGCAGATTTCCGCGCGCAATTTCAGTTACTTGCTGCAATGAACCCCTGCCC
ATGCGGTTATCTTGGTCATTACAACGGCAAGTGCCGTTGCACCCCCGATCAAATTGCACGCTATCGCAGCAAAATTTCTG
GTCCGCTGTTAGATCGCATAGACATTCAGATCGAAGTTCCTGCGGTGCCACAAGAAACTTTGCTCAAACAGGCTGATGGA
GAATCAAATAGTGATATTCAAGCACGTGTAAACGTCGCGCGGCAACATGCATTAACCCGCCAGAACAAACCGAACGCACA
GCTTACGGTAAGCGAGATTGACGTTCTCTGCGCGCCCGATGCACAAGGCGCCGCACTATTGCAGCAAGCCATCACCCGCC
TGAATTTATCGGCGCGCGCTTATCACCGCGTACTGAAAGTGGCGCGCACTATTGCCGATCTGGCAGGCAGCGAGAACATA
CTTGCTTCTCACATCGCCGAGGCTGTTCAGTATCGCAGGATGGGCAGACAGGGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

100

0.544
  comM Glaesserella parasuis strain SC1401

53.162

100

0.54
  comM Vibrio campbellii strain DS40M4

53.2

100

0.534
  comM Haemophilus influenzae Rd KW20

52.579

100

0.532
  comM Legionella pneumophila str. Paris

50.101

99.799

0.5
  comM Legionella pneumophila strain ERS1305867

50.101

99.799

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.47

Multiple sequence alignment