Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K7563_RS16025 Genome accession   NZ_CP104289
Coordinates   3475436..3476809 (+) Length   457 a.a.
NCBI ID   WP_072167645.1    Uniprot ID   A0A246I4G4
Organism   Stenotrophomonas maltophilia strain ACYCd.9D     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3470436..3481809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7563_RS16010 (K7563_16010) sucD 3471285..3472160 (-) 876 WP_005418610.1 succinate--CoA ligase subunit alpha -
  K7563_RS16015 (K7563_16015) sucC 3472185..3473354 (-) 1170 WP_005418614.1 ADP-forming succinate--CoA ligase subunit beta -
  K7563_RS16020 (K7563_16020) - 3473762..3475375 (+) 1614 WP_227837954.1 ATP-binding protein -
  K7563_RS16025 (K7563_16025) pilR 3475436..3476809 (+) 1374 WP_072167645.1 sigma-54 dependent transcriptional regulator Regulator
  K7563_RS16030 (K7563_16030) pilB 3476979..3478709 (-) 1731 WP_227837951.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K7563_RS16035 (K7563_16035) - 3478773..3479192 (-) 420 WP_227837949.1 pilin -
  K7563_RS16040 (K7563_16040) pilA 3479288..3479698 (-) 411 WP_227837948.1 pilin Machinery gene
  K7563_RS16045 (K7563_16045) pilC 3480054..3481313 (+) 1260 WP_227837946.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49682.95 Da        Isoelectric Point: 6.4421

>NTDB_id=728314 K7563_RS16025 WP_072167645.1 3475436..3476809(+) (pilR) [Stenotrophomonas maltophilia strain ACYCd.9D]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPVPGPAAEQGARLLGDSPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAV
VDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=728314 K7563_RS16025 WP_072167645.1 3475436..3476809(+) (pilR) [Stenotrophomonas maltophilia strain ACYCd.9D]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACGCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCAGCCAACCTTGCCGAAGCGCGCGAACTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGTATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACTGCCTTTGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGTGGCCTGGTCAAGCACGCGCTGGAACTCAACAACACCGAGCGCCCCGTGCCCGGCCCTGCCG
CCGAACAGGGCGCACGCCTGCTTGGCGACTCGCCGGCCATGGACGTGCTGCGTACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGCCCAGGGCGCCCG
CGCGGCCGGCCCGTTCGTACCGGTCAACTGCGGTGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGCTTCAGCGGTGCCCACGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCCCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTCGGCGCCGC
CAACGAAGAGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTCTACTACCGCATCAACGTGATTGAGCTGAGGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCGTCGGTGCTGGCACGGCTGGCCCGCAGCCACGGCCGCCCGACGCCTTTGCTGGCGCCGTCGGCATTGGATGC
ACTGGCCCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAAGAAG
ACCGCATCGGCGCCGACGACCTGCGCCTGCCGCAGCATGCCCCGCGCACGCCCGGCAGCGCAGCGCACGCCGAAGCCGTG
GTGGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A246I4G4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.939

99.781

0.628
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49