Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N2K86_RS21755 Genome accession   NZ_CP104285
Coordinates   4599760..4601280 (+) Length   506 a.a.
NCBI ID   WP_260659940.1    Uniprot ID   -
Organism   Enterobacter mori strain JT.W3M11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4594760..4606280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K86_RS21735 (N2K86_21735) ilvE 4596325..4597254 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  N2K86_RS21740 (N2K86_21740) ilvM 4597273..4597536 (-) 264 WP_059354681.1 acetolactate synthase 2 small subunit -
  N2K86_RS21745 (N2K86_21745) ilvG 4597533..4599179 (-) 1647 WP_260659939.1 acetolactate synthase 2 catalytic subunit -
  N2K86_RS22680 ilvX 4599182..4599232 (-) 51 WP_201405605.1 peptide IlvX -
  N2K86_RS21750 (N2K86_21750) ilvL 4599319..4599417 (-) 99 WP_001311244.1 ilv operon leader peptide -
  N2K86_RS21755 (N2K86_21755) comM 4599760..4601280 (+) 1521 WP_260659940.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N2K86_RS21760 (N2K86_21760) - 4601310..4601648 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  N2K86_RS21765 (N2K86_21765) hdfR 4601767..4602588 (+) 822 WP_260659941.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55008.94 Da        Isoelectric Point: 6.9581

>NTDB_id=728260 N2K86_RS21755 WP_260659940.1 4599760..4601280(+) (comM) [Enterobacter mori strain JT.W3M11]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDAVTDVPEDLCEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGIQG
ENSANVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNGEDAGWLEDTLTRFGLSIRAWQRLLKVARTIADVEDCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=728260 N2K86_RS21755 WP_260659940.1 4599760..4601280(+) (comM) [Enterobacter mori strain JT.W3M11]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTGATTTCCGTAGAGGTTCATTTGAGTAA
TGGTCTGCCCGGACTCACGCTTGTCGGGCTACCGGAAACGACGGTTAAAGAAGCCAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTACCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCGATTGCGCTTCTCGCGGCTTCTGAGCAGCTTAATACAACCAGGCTAGGCTCGTACGAGTTTGT
GGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCAATATCCGGAGCGCTGGAGGCAATCCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAAGTGAGTCTTATTGCAGAAAAGGGATGCCTTATAGCGGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGGCGACATGAACTGTCCGAGCCAGAGGAGTGTGACGATGCGGTAACGGATGTACC
AGAGGATCTCTGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATCACGGCAGCGGGTGGACACAATCTTC
TGCTGATTGGCCCACCGGGTACGGGTAAAACCATGCTGGCGAGCAGGTTGAGTGGGTTGCTACCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCCGCCATATATAGCCTGATCGGTTCTACGTCGCTGCAAAAACAGTGGCGTCGACGTCCTTTTCG
TTCTCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGAGAGATCTCACTGGCAC
ACAATGGCATTCTATTTCTTGATGAGCTGCCTGAATTTGAGCGCCGCGTGCTGGATGCACTGAGGGAGCCCATTGAATCC
GGCGAGATACATATCTCACGCACGCGCGCCAAAATAAGCTATCCCGCCCGGTTTCAACTCGTCGCGGCGATGAACCCCAG
CCCCACGGGGCACTATCAGGGGAATCATAACCGCTGTACGCCAGAGCAGACGCTGCGCTATCTGGGTAAGTTATCCGGCC
CATTCCTCGATCGTTTCGATTTATCGCTGGAAATCCCGCTTCCCCCGCCAGGCCTGCTCAGGCAGACGGGTATACAGGGT
GAAAACTCCGCGAATGTTCGAGAGCGGGTTATCGCGGCGCAGGCGCGACAGTATGCCCGTCAGAACAGACTGAATGCGCG
GCTGGATAATGCCGGGATCCGCCAGTTTTGCTCACTTAACGGTGAGGATGCGGGGTGGCTGGAAGATACATTGACGCGGT
TTGGGCTGTCCATACGTGCGTGGCAGCGTCTGTTGAAAGTGGCCAGAACCATCGCTGACGTGGAGGACTGTACTGACATT
GAAAGGAAACATTTGCAGGAAGCGCTGAGCTATCGCGCTATCGACCGCTTGCTGCTGCATTTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Glaesserella parasuis strain SC1401

57.791

100

0.579
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441