Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N2K86_RS01495 Genome accession   NZ_CP104285
Coordinates   310931..311461 (+) Length   176 a.a.
NCBI ID   WP_023310055.1    Uniprot ID   A0A7W2V7Q4
Organism   Enterobacter mori strain JT.W3M11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 305931..316461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K86_RS01480 (N2K86_01480) aphA 306670..307383 (+) 714 WP_260660221.1 acid phosphatase AphA -
  N2K86_RS01485 (N2K86_01485) - 307500..307853 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  N2K86_RS01490 (N2K86_01490) uvrA 307857..310679 (-) 2823 WP_260660222.1 excinuclease ABC subunit UvrA -
  N2K86_RS01495 (N2K86_01495) ssb 310931..311461 (+) 531 WP_023310055.1 single-stranded DNA-binding protein SSB1 Machinery gene
  N2K86_RS01500 (N2K86_01500) - 311522..311803 (-) 282 WP_008503385.1 YjcB family protein -
  N2K86_RS01505 (N2K86_01505) - 312460..314025 (+) 1566 WP_260660223.1 EAL domain-containing protein -
  N2K86_RS01510 (N2K86_01510) soxS 314032..314358 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  N2K86_RS01515 (N2K86_01515) soxR 314457..314915 (+) 459 WP_089598624.1 redox-sensitive transcriptional activator SoxR -
  N2K86_RS01520 (N2K86_01520) - 315274..315945 (+) 672 WP_260660224.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.81 Da        Isoelectric Point: 5.2456

>NTDB_id=728244 N2K86_RS01495 WP_023310055.1 310931..311461(+) (ssb) [Enterobacter mori strain JT.W3M11]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=728244 N2K86_RS01495 WP_023310055.1 310931..311461(+) (ssb) [Enterobacter mori strain JT.W3M11]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTCGTGGTGAACGTGGG
TGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCCCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W2V7Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.778
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364