Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N2K12_RS00635 Genome accession   NZ_CP104279
Coordinates   138496..140034 (+) Length   512 a.a.
NCBI ID   WP_260674581.1    Uniprot ID   -
Organism   Comamonas aquatica strain SCLZS63     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133496..145034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2K12_RS00615 glcF 133888..135129 (-) 1242 WP_260674578.1 glycolate oxidase subunit GlcF -
  N2K12_RS00620 glcE 135185..136297 (-) 1113 WP_260674579.1 glycolate oxidase subunit GlcE -
  N2K12_RS00625 - 136560..137924 (-) 1365 WP_260674580.1 ammonium transporter -
  N2K12_RS00630 - 137951..138289 (-) 339 WP_042411906.1 P-II family nitrogen regulator -
  N2K12_RS00635 comM 138496..140034 (+) 1539 WP_260674581.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N2K12_RS00640 - 140096..141013 (-) 918 WP_260674582.1 LysR family transcriptional regulator -
  N2K12_RS00645 - 141090..142307 (+) 1218 WP_244982937.1 YbfB/YjiJ family MFS transporter -
  N2K12_RS00650 - 142354..142953 (+) 600 WP_260674583.1 glutathione S-transferase family protein -
  N2K12_RS00655 - 143109..143573 (+) 465 WP_260674584.1 DUF4878 domain-containing protein -
  N2K12_RS00660 - 143570..144169 (+) 600 WP_260674585.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  N2K12_RS00665 - 144241..144876 (-) 636 WP_260674586.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54204.12 Da        Isoelectric Point: 8.0590

>NTDB_id=728202 N2K12_RS00635 WP_260674581.1 138496..140034(+) (comM) [Comamonas aquatica strain SCLZS63]
MSLACVQSRALLGLQAPAVTVEVHLANGLPSLALVGLADVEVKEARERVRCAIVNSGLEFPTNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLHGWEFAGELSLSGELRPVRGALATSLALPWGQTPARLVLPLDSAAEAACAPQAEVYGA
AHLLDVVAQLLPPGATPHDRASTGWQRMLPPPRQAPRVLLDLAEVKGQVQAKRALEIAAAGSHAVLLVGPPGSGKSMLAH
RFAGLLPPMTEQEAVESAAIASLCGRFQATQWGQRRTAHPHHTASAVALVGGGSPPKPGEISLAHHGTLFLDEFPEFSRS
ALEALREPLETGCITIARATHSAEFPARFQLIAAMNPCPCGFWGSAQRSCRCTPDQVARYQGKLSGPLLDRIDLHVEVHS
MPAEQLLASTEGERSQAVQARVAQARARALQRQGCSNQLLQGDALEQHLQLEDSAAALVRKAADRLGWSARATHRALRVA
RTIADLAGSPHIASAHVAEAMQYRRTLVPASP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=728202 N2K12_RS00635 WP_260674581.1 138496..140034(+) (comM) [Comamonas aquatica strain SCLZS63]
ATGAGCCTGGCTTGCGTCCAAAGTCGTGCCCTTTTGGGGCTGCAAGCGCCCGCCGTCACCGTGGAAGTGCATCTGGCCAA
CGGCCTGCCCAGCCTGGCCCTGGTGGGGCTGGCCGACGTGGAGGTCAAGGAAGCCCGCGAGCGCGTGCGCTGCGCCATCG
TCAACAGCGGCCTGGAATTTCCAACCAACAAGCGCATCACCGTGAACCTGGCACCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCCATCGCCCTGGGCATCCTGGCCGCCAGCGGGCAGATCGATGCGGCGCGGCTCCACGGCTGGGAGTT
CGCGGGCGAGCTGTCGCTGTCCGGCGAGCTGCGCCCGGTGCGCGGGGCCCTGGCCACCAGCCTGGCCCTGCCCTGGGGCC
AGACCCCGGCACGCCTGGTGCTGCCGCTGGACAGCGCCGCCGAGGCGGCCTGCGCCCCGCAGGCCGAGGTCTATGGTGCC
GCCCACCTGCTGGATGTGGTGGCGCAACTGCTGCCCCCGGGTGCCACCCCGCATGACCGCGCCAGCACGGGCTGGCAGCG
CATGCTGCCGCCACCGCGCCAGGCGCCCCGGGTCCTGCTGGATCTGGCCGAGGTCAAGGGCCAGGTCCAGGCCAAGCGCG
CCCTGGAGATTGCCGCCGCCGGCAGCCATGCCGTGCTGCTGGTCGGCCCGCCCGGGTCGGGCAAGTCCATGCTGGCCCAC
CGGTTTGCCGGCCTCCTGCCGCCCATGACCGAGCAGGAAGCCGTCGAAAGCGCGGCCATCGCCAGCCTGTGCGGGCGCTT
CCAGGCCACGCAGTGGGGCCAGCGCCGCACCGCCCACCCGCACCACACGGCCAGCGCCGTGGCCCTGGTCGGCGGGGGCT
CACCGCCCAAGCCCGGGGAGATCTCCCTGGCCCACCACGGCACGCTGTTCCTTGATGAATTCCCCGAATTCAGCCGCAGC
GCGCTGGAGGCCCTGCGCGAGCCGCTGGAGACCGGCTGCATCACCATCGCCCGCGCCACGCACAGCGCGGAGTTCCCGGC
GCGCTTCCAGCTGATTGCGGCCATGAACCCCTGCCCCTGCGGCTTCTGGGGCAGTGCCCAGCGCAGCTGCCGCTGCACGC
CCGACCAGGTGGCGCGCTACCAGGGCAAACTCAGCGGCCCGCTGCTGGACCGTATCGACCTGCACGTCGAGGTGCACAGC
ATGCCGGCCGAACAGCTGCTGGCCAGCACCGAGGGCGAACGCAGCCAGGCCGTGCAGGCCCGCGTGGCCCAGGCGCGGGC
GCGGGCCTTGCAGCGCCAGGGCTGCAGCAACCAACTGCTGCAGGGCGACGCGCTGGAGCAGCACCTGCAGCTGGAGGACA
GCGCCGCCGCCCTGGTGCGCAAGGCCGCCGACCGCCTGGGCTGGTCGGCCCGCGCCACCCACCGCGCGCTGCGCGTGGCG
CGCACCATCGCCGACCTGGCCGGCAGCCCCCACATCGCCAGCGCCCACGTGGCCGAGGCCATGCAGTACCGCCGCACCCT
GGTGCCCGCCAGCCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-405)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.593

98.828

0.5
  comM Vibrio campbellii strain DS40M4

49.706

99.805

0.496
  comM Haemophilus influenzae Rd KW20

48.532

99.805

0.484
  comM Glaesserella parasuis strain SC1401

48.718

99.023

0.482
  comM Legionella pneumophila str. Paris

47.945

99.805

0.479
  comM Legionella pneumophila strain ERS1305867

47.945

99.805

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.27

99.805

0.422