Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N1710_RS18840 Genome accession   NZ_CP104108
Coordinates   4010886..4012406 (+) Length   506 a.a.
NCBI ID   WP_105568603.1    Uniprot ID   -
Organism   Cronobacter sakazakii strain USDA-ARS-USMARC-54664     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4005886..4017406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1710_RS18820 (N1710_18820) - 4007447..4008376 (-) 930 WP_004387276.1 branched-chain amino acid transaminase -
  N1710_RS18825 (N1710_18825) ilvM 4008397..4008654 (-) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  N1710_RS18830 (N1710_18830) ilvG 4008651..4010297 (-) 1647 WP_105568604.1 acetolactate synthase 2 catalytic subunit -
  N1710_RS18835 (N1710_18835) ilvL 4010436..4010534 (-) 99 WP_071601137.1 ilv operon leader peptide -
  N1710_RS18840 (N1710_18840) comM 4010886..4012406 (+) 1521 WP_105568603.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N1710_RS18845 (N1710_18845) - 4012486..4012824 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  N1710_RS18850 (N1710_18850) hdfR 4012932..4013765 (+) 834 WP_087600399.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54932.28 Da        Isoelectric Point: 7.5785

>NTDB_id=727650 N1710_RS18840 WP_105568603.1 4010886..4012406(+) (comM) [Cronobacter sakazakii strain USDA-ARS-USMARC-54664]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGEYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFLEGKTQLECAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVNPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVIVSRERQFARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQWI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=727650 N1710_RS18840 WP_105568603.1 4010886..4012406(+) (comM) [Cronobacter sakazakii strain USDA-ARS-USMARC-54664]
ATGTCGTTATCAGTTATTCATACCCGCGCTGCGCTTGGGGTTAAGGCGCCGCTCGTGACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGATAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TATGATCTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGAATATGAATTTGT
AGGTGAACTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATCGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTGGTGGCTCATCATCTG
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAAGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGACATAACCTGC
TTTTTATTGGGCCTCCCGGTACAGGTAAAACTATGCTTGCCAGCAGACTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCTGCGATACTCAGCCTGGTCAACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
GGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCAATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAACGGCGTGCTTTTTCTGGATGAATTACCTGAGTTTGAACGTCGCGTACTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
TCCGACAGGGCACTATAAAGGCAATCACAATCGCTGCTCACCGGAGCAAACGCTGCGCTATCTTGGGCGGCTTTCCGGGC
CATTTCTTGACAGGTTTGATCTCTCCCTTGAAATCCCGCTTCCCCCGCCGGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGGAACGAGTCATTGTTAGCAGAGAGCGTCAGTTTGCACGTCAGGGAAAACTCAACGCCAT
GTTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCACGCACGATTGCAGATTGTGAACAGAAACAATGGATT
GGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCGCATTTACAAAACATGATGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.493

100

0.619
  comM Glaesserella parasuis strain SC1401

59.961

100

0.601
  comM Vibrio cholerae strain A1552

60.558

99.209

0.601
  comM Vibrio campbellii strain DS40M4

60.159

99.209

0.597
  comM Legionella pneumophila str. Paris

47.305

99.012

0.468
  comM Legionella pneumophila strain ERS1305867

47.305

99.012

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.811

100

0.441