Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NZD89_RS27700 Genome accession   NZ_CP104067
Coordinates   5704161..5704640 (-) Length   159 a.a.
NCBI ID   WP_268005840.1    Uniprot ID   -
Organism   Alicyclobacillus fastidiosus strain DSM 17978     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5699161..5709640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZD89_RS27665 (NZD89_27675) - 5699687..5700379 (-) 693 WP_268005833.1 response regulator -
  NZD89_RS27670 (NZD89_27680) - 5700423..5700812 (-) 390 WP_268005834.1 hypothetical protein -
  NZD89_RS27675 (NZD89_27685) dnaB 5700866..5702248 (-) 1383 WP_268005835.1 replicative DNA helicase -
  NZD89_RS27680 (NZD89_27690) rplI 5702331..5702774 (-) 444 WP_268005836.1 50S ribosomal protein L9 -
  NZD89_RS27685 (NZD89_27695) - 5703001..5703300 (-) 300 WP_268005837.1 MazG-like family protein -
  NZD89_RS27690 (NZD89_27700) - 5703493..5703678 (+) 186 WP_268005838.1 small, acid-soluble spore protein, H family -
  NZD89_RS27695 (NZD89_27705) rpsR 5703859..5704089 (-) 231 WP_268005839.1 30S ribosomal protein S18 -
  NZD89_RS27700 (NZD89_27710) ssbA 5704161..5704640 (-) 480 WP_268005840.1 single-stranded DNA-binding protein Machinery gene
  NZD89_RS27705 (NZD89_27715) rpsF 5704658..5704945 (-) 288 WP_268005841.1 30S ribosomal protein S6 -
  NZD89_RS27710 (NZD89_27720) ychF 5705094..5706194 (-) 1101 WP_268005842.1 redox-regulated ATPase YchF -
  NZD89_RS27715 (NZD89_27725) - 5706585..5708579 (-) 1995 WP_268005843.1 molybdopterin-dependent oxidoreductase -
  NZD89_RS27720 (NZD89_27730) - 5708551..5708784 (-) 234 WP_284286366.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17516.46 Da        Isoelectric Point: 4.6723

>NTDB_id=727445 NZD89_RS27700 WP_268005840.1 5704161..5704640(-) (ssbA) [Alicyclobacillus fastidiosus strain DSM 17978]
MLNRVILIGRLTADPELRYTNSGTPVASFTLAVDRMRSGQAGERQTDFINIVVWQKQAEIVSQYLQKGRLAAVDGRLQIR
TYDNREGQKVRIAEVVAESVRFLDRGSDAQQGGSYGGGAPSISANRPARPERGSAPLYEDDPFADDSQTIDISEDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=727445 NZD89_RS27700 WP_268005840.1 5704161..5704640(-) (ssbA) [Alicyclobacillus fastidiosus strain DSM 17978]
ATGCTGAACCGGGTAATCTTAATCGGCCGTTTGACCGCTGATCCTGAATTGCGCTACACCAATTCGGGAACACCTGTTGC
GTCGTTTACACTTGCGGTCGACCGCATGCGGTCAGGCCAGGCTGGGGAACGACAGACAGACTTTATCAATATCGTTGTCT
GGCAGAAGCAGGCGGAAATCGTATCACAGTATTTGCAAAAGGGTCGTTTGGCTGCGGTCGATGGTCGTTTGCAAATTCGC
ACATACGACAACCGAGAGGGTCAAAAGGTTCGGATTGCTGAAGTTGTCGCCGAGTCTGTTCGCTTTTTGGACAGGGGCTC
CGACGCACAACAGGGCGGTAGCTATGGCGGTGGCGCACCGAGTATCAGTGCCAATCGACCGGCGCGCCCGGAACGTGGTT
CAGCACCTCTGTACGAAGATGACCCGTTTGCAGATGACAGTCAAACCATCGACATTTCGGAAGATGATTTGCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.425

100

0.541
  ssb Latilactobacillus sakei subsp. sakei 23K

43.023

100

0.465
  ssb Neisseria gonorrhoeae MS11

35.838

100

0.39
  ssb Neisseria meningitidis MC58

35.838

100

0.39
  ssb Vibrio cholerae strain A1552

32.222

100

0.365