Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   N2A96_RS02040 Genome accession   NZ_CP104047
Coordinates   371907..373886 (+) Length   659 a.a.
NCBI ID   WP_004234177.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 366907..378886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS02025 (N2A96_02025) - 367723..368916 (-) 1194 WP_051018443.1 D-alanyl-D-alanine carboxypeptidase family protein -
  N2A96_RS02030 (N2A96_02030) pbp3 368993..370213 (-) 1221 WP_037621979.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  N2A96_RS02035 (N2A96_02035) pbp3 370337..371575 (-) 1239 WP_003108557.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  N2A96_RS02040 (N2A96_02040) amiA3 371907..373886 (+) 1980 WP_004234177.1 peptide ABC transporter substrate-binding protein Regulator
  N2A96_RS02045 (N2A96_02045) amiC 373954..375453 (+) 1500 WP_037621976.1 ABC transporter permease Regulator
  N2A96_RS02050 (N2A96_02050) amiD 375453..376379 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  N2A96_RS02055 (N2A96_02055) amiE 376388..377458 (+) 1071 WP_003107438.1 ABC transporter ATP-binding protein Regulator
  N2A96_RS02060 (N2A96_02060) amiF 377451..378395 (+) 945 WP_003108548.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73350.62 Da        Isoelectric Point: 5.2041

>NTDB_id=727286 N2A96_RS02040 WP_004234177.1 371907..373886(+) (amiA3) [Streptococcus parauberis strain KSP10]
MKNGKWLAAAGIAVLSVSALTACGNGSSKDSKSKTYSYVYTTDPDTLDYLVSGRSTTSEITQNGVDGLMEYDNEGNLVPS
VAKSWTVSKDGLTYTYKIRKDSKWYTADGEEYAKVTAEDFVTGMKHAADSNSDALYLVQDSIKGLSDYIDGKTKDFSTVG
VKAIDKNTVQYTLKQPESFWNSKLTYGILSPVNADFLKSQGKDFGKASDASSILYNGPFLISALTSKSSIEFTKNENYWD
KEDVHLDAVQLTYYDGQDQESLFRNFDKGAYSAARLFPTTPSYKTAKKKYGENITYAPQKSNIYYATFNLNRTAYDHTKK
TDDKQKEDTRKAVLNKDFRQALTFGFNRKSYTAQSAGEEAASKSLRNMLIPPAFVQIKGEDFGKTVEKDLATYGDQWKDV
SLADAQDGLYNKDKAKAQMDKAKEALEAEGVQFPIHIDMPQDQTATVNMQQAQSMKQSMEDSLGKENVVIDIIELNADTY
NNVTYMAETPTQQDWDISTASGWSPDYLDPSSYLDIFNPSLANAQTKFIGLEPIKDNTIASEAGLDEFTKLANEASKITD
DKDARYEKYAKAQAALADSAVYIPTYSLGGTPAVTKVVPFSAAFGWAGNKSDNTYFKYVQLQDKPVTAKQFNKAMKDWKK
SKEKSNKKYEESLEKHIEK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=727286 N2A96_RS02040 WP_004234177.1 371907..373886(+) (amiA3) [Streptococcus parauberis strain KSP10]
ATGAAAAATGGGAAATGGTTAGCGGCAGCGGGGATTGCTGTTTTGTCAGTTTCAGCTTTGACTGCCTGTGGTAATGGTTC
AAGTAAAGATAGCAAAAGTAAAACCTATAGCTATGTTTATACAACTGATCCTGATACCTTGGATTACTTAGTTTCAGGGC
GTTCAACAACCAGTGAAATCACCCAAAATGGTGTTGATGGCTTGATGGAATATGACAACGAAGGGAATTTGGTTCCTTCT
GTAGCTAAAAGCTGGACAGTATCAAAAGACGGTTTAACTTATACCTATAAAATACGTAAAGATTCAAAATGGTATACAGC
TGATGGTGAAGAATACGCTAAGGTAACAGCGGAAGACTTTGTGACTGGCATGAAACATGCTGCAGATAGCAATTCTGATG
CCCTTTACCTAGTTCAAGATTCAATTAAAGGTTTAAGTGATTATATCGATGGGAAAACAAAAGATTTCTCAACTGTTGGT
GTTAAAGCCATTGACAAAAACACAGTTCAATATACATTGAAACAACCAGAAAGTTTCTGGAATTCTAAATTAACTTATGG
TATCTTATCTCCAGTTAATGCAGATTTTCTAAAATCACAAGGTAAAGATTTTGGTAAAGCATCTGATGCTTCATCGATTC
TTTATAACGGACCATTCCTTATCTCCGCATTAACAAGTAAATCATCAATTGAATTTACAAAAAATGAAAACTATTGGGAT
AAAGAAGATGTTCACTTAGATGCTGTTCAATTAACTTACTATGATGGACAAGATCAAGAGTCTCTATTTAGAAACTTTGA
TAAAGGTGCTTATTCGGCTGCACGTTTATTCCCAACAACTCCATCTTACAAGACAGCTAAGAAAAAATATGGCGAAAACA
TCACTTATGCACCTCAAAAATCAAATATTTATTATGCAACATTTAATTTAAACCGTACGGCTTATGACCATACTAAAAAG
ACAGACGATAAACAAAAAGAGGATACTCGTAAAGCAGTTCTAAATAAAGATTTCCGTCAAGCTTTAACATTTGGTTTTAA
CCGTAAATCCTATACAGCTCAATCAGCTGGTGAAGAAGCAGCAAGCAAATCACTTCGTAATATGCTAATTCCACCAGCAT
TTGTTCAAATTAAGGGTGAAGACTTTGGCAAGACTGTTGAAAAAGATTTAGCGACATACGGAGATCAATGGAAAGATGTT
AGCCTAGCTGATGCCCAAGATGGTCTTTACAATAAAGACAAAGCTAAGGCTCAAATGGATAAAGCTAAAGAAGCCTTGGA
AGCTGAAGGTGTTCAATTCCCAATTCACATTGATATGCCTCAAGATCAGACTGCTACCGTAAATATGCAACAAGCCCAAT
CCATGAAGCAATCAATGGAAGACTCACTTGGTAAAGAAAATGTTGTAATTGACATTATTGAGCTCAATGCTGATACCTAT
AACAATGTTACTTATATGGCAGAAACACCAACTCAACAAGATTGGGATATTTCTACAGCTTCTGGATGGAGTCCTGACTA
CTTAGACCCAAGCTCATATCTTGATATCTTTAATCCAAGCTTGGCTAATGCACAAACTAAATTTATTGGACTTGAACCAA
TTAAAGATAATACTATAGCATCTGAAGCTGGTTTAGATGAATTTACTAAATTAGCAAATGAAGCAAGTAAGATTACTGAT
GACAAGGATGCTCGTTATGAAAAATATGCAAAAGCACAAGCTGCTCTTGCGGATTCAGCAGTCTACATTCCAACATACTC
ACTTGGAGGAACGCCTGCAGTAACAAAAGTTGTTCCATTCTCAGCTGCATTTGGTTGGGCAGGTAACAAATCAGATAATA
CATATTTCAAATATGTACAATTACAAGATAAACCTGTAACGGCTAAACAATTCAACAAAGCAATGAAGGATTGGAAAAAG
TCAAAAGAAAAATCAAATAAAAAATATGAAGAGTCATTAGAAAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

52.879

100

0.53
  amiA Streptococcus salivarius strain HSISS4

52.656

100

0.527
  amiA3 Streptococcus thermophilus LMD-9

52.424

100

0.525