Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   N2A96_RS02045 Genome accession   NZ_CP104047
Coordinates   373954..375453 (+) Length   499 a.a.
NCBI ID   WP_037621976.1    Uniprot ID   A0A854W9A9
Organism   Streptococcus parauberis strain KSP10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 368954..380453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS02030 (N2A96_02030) pbp3 368993..370213 (-) 1221 WP_037621979.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  N2A96_RS02035 (N2A96_02035) pbp3 370337..371575 (-) 1239 WP_003108557.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  N2A96_RS02040 (N2A96_02040) amiA3 371907..373886 (+) 1980 WP_004234177.1 peptide ABC transporter substrate-binding protein Regulator
  N2A96_RS02045 (N2A96_02045) amiC 373954..375453 (+) 1500 WP_037621976.1 ABC transporter permease Regulator
  N2A96_RS02050 (N2A96_02050) amiD 375453..376379 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  N2A96_RS02055 (N2A96_02055) amiE 376388..377458 (+) 1071 WP_003107438.1 ABC transporter ATP-binding protein Regulator
  N2A96_RS02060 (N2A96_02060) amiF 377451..378395 (+) 945 WP_003108548.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55849.31 Da        Isoelectric Point: 10.0775

>NTDB_id=727287 N2A96_RS02045 WP_037621976.1 373954..375453(+) (amiC) [Streptococcus parauberis strain KSP10]
MKKYIFERILRSLISILLVTTLTYVIVFTLVPTNLIFKQDPNYNKMVTTPDKKDNYRNTIFERMGYVNYYNSKELQSKAE
KMDKTVTIEPTAKNKAVYKKFIKQQGKGWTLKEFEESKEFYAVRDIPIYERVWNFFSHILVIDHPWTIQDPKNPNLERYI
RPEMDPAVGPALVGSGTKHKYLLFFDGNFPFIHQNFVSFDLGTSYPTYANIPVIQVITQGQGRSLSEQTKFPSGVTKFSP
IDITSRTYKSPKDADARDRANFGPKDPYTATKNKHAEPSMIANSFKIGIIGVALSYIIGLPIGMLMAYYKDGIFDRFSTA
ATTFMLALPSIALIYIVRFLGSKIGLPDTFPLLGASDPRSYVLPALILGILGTPGTVVWFRRYIVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAIVATIAGATLTETVFAFPGMGKMLIDAIKAANNSMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=727287 N2A96_RS02045 WP_037621976.1 373954..375453(+) (amiC) [Streptococcus parauberis strain KSP10]
ATGAAAAAGTATATATTCGAGCGCATTTTGAGGTCTTTGATTTCAATTTTGTTGGTAACGACATTAACTTATGTCATTGT
TTTTACATTGGTACCAACAAACTTGATTTTTAAACAGGACCCCAACTATAATAAGATGGTGACTACACCAGATAAGAAAG
ATAACTACCGTAATACCATTTTTGAACGCATGGGTTATGTTAATTACTATAATAGTAAAGAACTTCAAAGCAAAGCTGAA
AAAATGGATAAGACCGTGACGATTGAACCAACTGCTAAAAATAAAGCGGTCTACAAAAAATTCATCAAGCAACAAGGTAA
AGGTTGGACGCTGAAAGAATTCGAAGAAAGCAAAGAATTTTATGCGGTTAGAGATATTCCAATCTATGAACGTGTTTGGA
ACTTCTTTAGTCATATCCTTGTTATTGATCATCCTTGGACGATACAAGATCCAAAGAATCCTAATTTGGAACGCTATATT
AGACCCGAAATGGATCCAGCAGTCGGACCTGCCTTAGTTGGTTCTGGAACTAAGCATAAATACTTGCTCTTCTTTGATGG
GAATTTCCCATTCATTCACCAAAACTTTGTTTCCTTTGACTTAGGAACTTCTTATCCAACCTATGCTAATATTCCTGTAA
TTCAGGTTATCACACAAGGACAAGGTAGAAGTCTATCAGAACAAACTAAATTCCCGTCTGGAGTTACTAAGTTTTCACCA
ATTGATATCACAAGTAGAACTTATAAATCACCTAAAGATGCAGATGCTCGTGACCGAGCTAATTTCGGCCCGAAAGATCC
TTATACAGCAACTAAGAATAAACATGCTGAGCCATCAATGATTGCAAATTCATTTAAAATTGGAATCATTGGTGTTGCCT
TGTCATATATTATTGGGCTACCTATTGGTATGCTTATGGCCTATTATAAAGATGGAATTTTTGATCGATTTTCTACAGCA
GCTACAACATTTATGTTGGCTTTGCCAAGTATTGCCTTGATTTATATTGTTCGCTTCTTGGGTTCGAAAATTGGTTTACC
AGATACTTTTCCATTGTTAGGAGCCAGTGATCCAAGATCTTATGTATTGCCTGCATTAATTTTAGGTATTTTAGGAACGC
CAGGAACCGTTGTATGGTTCCGTCGTTATATCGTTGACTTACAAGGAAGCGATTTTGTTCGATTTGCGCGTGCAAAAGGA
TTAACAGAAGCTGAAATTTCAAAAAATCACCTATTTAAGCAAGCGATGGTACCAATTGTTAATGGTATTCCCCAAGCAAT
TGTTGCAACTATCGCAGGTGCGACACTGACTGAAACAGTCTTTGCCTTCCCAGGTATGGGTAAAATGTTAATTGATGCTA
TTAAAGCAGCAAATAACTCAATGGTCGTTGGACTAGTTTTTATCTTTGCAGTCTTATCAATTCTTGCTTTATTAGCAGGG
GACATTTTAATGACTATCTTAGATCCACGTATTAAATTATCAAGTAAAGGAGGGAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854W9A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

61.323

100

0.613
  amiC Streptococcus thermophilus LMG 18311

61.122

100

0.611
  amiC Streptococcus salivarius strain HSISS4

60.922

100

0.609