Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   N2A96_RS02060 Genome accession   NZ_CP104047
Coordinates   377451..378395 (+) Length   314 a.a.
NCBI ID   WP_003108548.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 372451..383395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS02045 (N2A96_02045) amiC 373954..375453 (+) 1500 WP_037621976.1 ABC transporter permease Regulator
  N2A96_RS02050 (N2A96_02050) amiD 375453..376379 (+) 927 WP_003104826.1 oligopeptide ABC transporter permease OppC Regulator
  N2A96_RS02055 (N2A96_02055) amiE 376388..377458 (+) 1071 WP_003107438.1 ABC transporter ATP-binding protein Regulator
  N2A96_RS02060 (N2A96_02060) amiF 377451..378395 (+) 945 WP_003108548.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35731.04 Da        Isoelectric Point: 6.9313

>NTDB_id=727290 N2A96_RS02060 WP_003108548.1 377451..378395(+) (amiF) [Streptococcus parauberis strain KSP10]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIIYDGKQINKKKSNS
EREELIKKIQMIFQDPAASLNERATVDYIISEGLYNHKLFKSEEDRKDKIKNMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRMQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPVHPYTKSLLSAVPIPDPILERQKKLLVYNVDQHDYTVDKPEMVEIQPGHFVWANKLETEKYKKEIADRQQSN

Nucleotide


Download         Length: 945 bp        

>NTDB_id=727290 N2A96_RS02060 WP_003108548.1 377451..378395(+) (amiF) [Streptococcus parauberis strain KSP10]
ATGTCTGAGAAGCTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTTGCTGTTAAAAA
TGCCAATTTCTTTATTAATCGAGGGGAAACTTTTTCTTTGGTTGGTGAGTCAGGAAGTGGGAAAACAACAATTGGGCGTG
CTATCATTGGTTTAAATGATACGAGTTCAGGTGAAATCATTTATGATGGTAAACAAATCAATAAGAAAAAAAGTAATTCA
GAACGTGAAGAATTAATTAAAAAGATTCAAATGATCTTTCAAGATCCAGCAGCAAGTTTGAATGAACGTGCAACTGTTGA
CTATATTATTTCTGAAGGACTATACAATCATAAACTGTTCAAAAGTGAAGAAGACCGTAAAGATAAAATCAAAAACATGA
TGACAGAAGTTGGACTTTTGTCTGAACATTTAACACGTTATCCTCATGAATTTTCAGGTGGACAACGTCAGCGTATCGGG
ATTGCGCGTGCTTTAGTTATGGATCCAGAATTTATTATTGCTGATGAGCCTATCTCGGCTCTAGACGTTTCGGTTCGAGC
TCAAGTGCTAAATCTTCTAAAACGGATGCAAAGAGAAAAAGGTTTAACTTATCTCTTTATTGCCCATGATTTATCAGTAG
TTCGGTTCATATCTGATCGAATCGCAGTTATTCATAAAGGTGTTATTGTAGAAGTAGCTGAAACTGAAGAATTATTTATC
AATCCAGTTCATCCATATACTAAATCTCTATTATCCGCTGTACCGATTCCGGATCCAATTTTGGAAAGACAGAAAAAACT
TCTTGTCTATAACGTTGATCAGCATGACTATACAGTTGACAAACCAGAAATGGTAGAAATCCAACCAGGTCACTTCGTTT
GGGCGAATAAATTAGAAACAGAGAAATATAAAAAGGAAATTGCTGATAGACAGCAGTCCAACTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

81.373

97.452

0.793
  amiF Streptococcus salivarius strain HSISS4

81.373

97.452

0.793
  amiF Streptococcus thermophilus LMD-9

81.046

97.452

0.79