Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N0B28_RS25435 Genome accession   NZ_CP104044
Coordinates   5550528..5552018 (+) Length   496 a.a.
NCBI ID   WP_043863348.1    Uniprot ID   A0A9X8HIM5
Organism   Pseudomonas sp. SD17-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5545528..5557018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N0B28_RS25410 (N0B28_25425) - 5546260..5546955 (+) 696 WP_123753391.1 HAD-IA family hydrolase -
  N0B28_RS25415 (N0B28_25430) sutA 5547115..5547438 (-) 324 WP_043863351.1 transcriptional regulator SutA -
  N0B28_RS25420 (N0B28_25435) - 5547904..5549229 (-) 1326 WP_043863350.1 ammonium transporter -
  N0B28_RS25425 (N0B28_25440) glnK 5549271..5549609 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  N0B28_RS25430 (N0B28_25445) - 5549951..5550214 (+) 264 WP_043863349.1 accessory factor UbiK family protein -
  N0B28_RS25435 (N0B28_25450) comM 5550528..5552018 (+) 1491 WP_043863348.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N0B28_RS25440 (N0B28_25455) - 5552140..5552277 (+) 138 WP_196932072.1 hypothetical protein -
  N0B28_RS25445 (N0B28_25460) - 5552425..5553816 (+) 1392 WP_275729524.1 PAAR domain-containing protein -
  N0B28_RS25450 (N0B28_25465) - 5554301..5556115 (-) 1815 WP_058541728.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52926.88 Da        Isoelectric Point: 7.7075

>NTDB_id=727196 N0B28_RS25435 WP_043863348.1 5550528..5552018(+) (comM) [Pseudomonas sp. SD17-1]
MSLALVHSRAQVGVLAPAVTIEAHLANGLPNLTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQMPIASLHAVECLGELALSGAVRCVQGVLPAALAAREAGRALVVPRENAEEACLASGLVVYAVDHL
LELVAHLNGQQPLEPYKANGLVLHSQPYPDLNEVQGQLAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLNE
REALEVAAIQSVASPLPLNSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYHGDPTGRCRCSSDQIQRYRNKLSGPLLDRIDLHLTVAREATALSHCTDN
GPASAHIAGQVAAARERQQQRQGCANAFLELPGLRQHCALSADDQQWLETACERLTLSLRAAHRLLKVARTLADLEQAAH
IARVHLAEALQYRPGP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=727196 N0B28_RS25435 WP_043863348.1 5550528..5552018(+) (comM) [Pseudomonas sp. SD17-1]
ATGTCCCTCGCCCTTGTCCACAGCCGCGCCCAGGTGGGCGTACTGGCCCCTGCGGTCACCATCGAAGCGCACCTGGCCAA
CGGCCTGCCCAACCTGACCCTGGTCGGCCTGCCCGAAGCCACGGTAAAGGAAAGCAAGGACCGTGTGCGCAGCGCCATCC
TCAACTCCGGCCTGGAGTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGACGC
TTCGACCTGGCCATAGCCCTGGGCATCCTGGCCGCCAACGGGCAGATGCCGATCGCCTCGCTGCACGCAGTGGAATGCCT
GGGCGAGCTGGCGCTGTCGGGGGCGGTGCGCTGCGTGCAGGGCGTGCTGCCTGCCGCCCTTGCCGCCCGCGAAGCCGGGC
GCGCCCTGGTGGTGCCACGGGAGAATGCCGAGGAGGCCTGCCTGGCTTCGGGCCTGGTGGTGTACGCCGTAGACCACCTG
CTGGAACTGGTCGCGCACCTCAACGGCCAGCAGCCCCTCGAACCCTACAAGGCCAACGGCCTGGTCCTGCACAGCCAGCC
CTACCCCGACCTCAACGAGGTGCAGGGCCAGCTTGCCGCCAAGCGTGCCCTGCTGGTCGCGGCGGCCGGGGCCCACAACC
TGCTGTTCAGCGGGCCACCCGGCACCGGCAAGACTCTGCTCGCCAGCCGCCTGCCCGGCCTGCTGCCACCGCTGAACGAG
CGCGAAGCGCTGGAGGTGGCGGCCATCCAGTCGGTCGCCAGCCCGCTGCCGCTCAACAGCTGGCCGCAGCGTCCGTTTCG
CCACCCGCATCACTCGGCGTCGGGGGCCGCACTGGTCGGCGGTGGCAGCCGCCCGCAACCCGGCGAGATCACCCTGGCCC
ACCATGGCGTGCTGTTTCTGGATGAGTTGCCGGAGTTCGAGCGGCGCGTGCTGGAAGTGCTGCGCGAGCCCCTGGAATCG
GGCGAAATCGTGATCGCCCGGGCCAAGGACAAGATCCGCTTCCCGGCCCGCTTCCAATTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCATGGCGACCCCACCGGTCGCTGCCGATGCAGCAGCGACCAGATCCAGCGCTACCGCAACAAGCTCT
CCGGCCCGTTGCTTGATCGCATCGACCTGCACCTGACCGTCGCCCGTGAAGCCACGGCGCTCTCGCACTGCACCGACAAC
GGCCCCGCCAGTGCCCACATCGCAGGGCAGGTGGCTGCCGCACGCGAACGACAACAACAGCGCCAGGGCTGTGCCAACGC
CTTTCTCGAGCTGCCCGGCCTGCGCCAGCACTGCGCGCTGTCCGCTGACGATCAGCAATGGCTGGAAACCGCGTGCGAAC
GACTAACCTTGTCGCTACGGGCCGCGCACCGCCTGCTCAAGGTGGCGCGTACGCTGGCCGATCTGGAACAGGCCGCACAC
ATTGCGCGTGTGCACCTGGCCGAGGCCCTGCAGTACCGCCCCGGGCCTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.798

0.56
  comM Vibrio campbellii strain DS40M4

55.422

100

0.556
  comM Haemophilus influenzae Rd KW20

55.2

100

0.556
  comM Glaesserella parasuis strain SC1401

54.274

100

0.55
  comM Legionella pneumophila str. Paris

49.102

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.102

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.931

100

0.478