Detailed information NTG0726973

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N0B71_RS13190
• Genome accession: NZ_CP104011
• Coordinates: 2874259..2875131 (-)
• Length: 290 a.a.
• NCBI ID: WP_259759286.1
• Uniprot ID: -
• Organism: Pseudomonas sp. GCEP-101 isolate Gut
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2869259..2880131

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N0B71_RS13150	-	2869410..2870708 (-)	1299	WP_259759283.1	NAD(P)/FAD-dependent oxidoreductase	-
N0B71_RS13155	-	2870762..2870932 (-)	171	WP_065084249.1	DUF3094 domain-containing protein	-
N0B71_RS13160	-	2871027..2871656 (-)	630	WP_259759284.1	DUF1780 domain-containing protein	-
N0B71_RS13165	-	2871778..2872212 (+)	435	WP_259759552.1	FAD/FMN-containing dehydrogenase	-
N0B71_RS13170	-	2872209..2872898 (+)	690	WP_226046021.1	energy-coupling factor ABC transporter permease	-
N0B71_RS13175	-	2873005..2873220 (+)	216	WP_226046022.1	hypothetical protein	-
N0B71_RS13180	yacG	2873386..2873589 (-)	204	WP_226046023.1	DNA gyrase inhibitor YacG	-
N0B71_RS13185	coaE	2873586..2874197 (-)	612	WP_259759285.1	dephospho-CoA kinase	-
N0B71_RS13190	pilD	2874259..2875131 (-)	873	WP_259759286.1	A24 family peptidase	Machinery gene
N0B71_RS13195	pilC	2875134..2876351 (-)	1218	WP_259759287.1	type II secretion system F family protein	Machinery gene
N0B71_RS13200	pilB	2876355..2878055 (-)	1701	WP_259759288.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N0B71_RS13205	pilA2	2878282..2878683 (+)	402	WP_259759289.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
N0B71_RS13215	galE	2878915..2879931 (-)	1017	WP_259759290.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32037.07 Da
• Isoelectric Point: 7.0080

>NTDB_id=726973 N0B71_RS13190 WP_259759286.1 2874259..2875131(-) (pilD) [Pseudomonas sp. GCEP-101 isolate Gut]
MPVLDFLASTPLAFVLCVTLLGLLVGSFLNVVIHRLPRMMQLDWQQQARETLGLPEGEKQPTYNLVLPNSRCPHCAHEIK
PWENVPVVSWLVLGGKCSACKAPISKRYPLVELACGALSAFIAWHYGFGWQAGAMLLLTWGLLAMSMIDIDHQLLPDDLV
LPLLWLGLIVNHFGLFTNLGDALWGAVFGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGVIMLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=726973 N0B71_RS13190 WP_259759286.1 2874259..2875131(-) (pilD) [Pseudomonas sp. GCEP-101 isolate Gut]
ATGCCAGTGCTCGATTTCCTGGCCAGCACCCCGCTGGCCTTTGTTTTATGCGTCACCCTCCTCGGCCTGCTGGTGGGCAG
CTTCCTCAACGTGGTGATCCATCGCCTGCCGCGGATGATGCAGCTCGATTGGCAGCAGCAGGCGCGGGAAACATTGGGGC
TGCCGGAGGGCGAGAAGCAGCCGACGTATAACCTGGTATTGCCGAACTCCCGGTGCCCGCACTGCGCCCACGAGATCAAG
CCCTGGGAGAATGTCCCGGTGGTCAGTTGGCTGGTTTTGGGCGGAAAGTGTTCGGCCTGCAAGGCGCCGATCAGCAAGCG
TTATCCGCTGGTGGAGCTCGCTTGCGGTGCGCTGTCAGCCTTCATTGCCTGGCATTACGGCTTTGGCTGGCAGGCGGGGG
CGATGCTGTTGCTGACCTGGGGCTTGCTGGCGATGAGCATGATCGATATCGATCATCAGCTGCTGCCGGACGACTTGGTG
TTGCCGTTGCTGTGGCTCGGTCTCATCGTCAACCACTTCGGCCTCTTCACCAACCTGGGCGACGCGCTCTGGGGCGCGGT
GTTCGGTTACCTGAGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGGGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTGGGC
GCGGTGCTGGGCGTGATCATGCTGCGCCTGCGCAACGCGGAAACCAGTACCCCTATCCCCTTCGGCCCCTATCTGGCCAT
CGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACCGCGACCTATCTGCAGTTCGCCGGTTTCCGCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.597	95.862	0.514
pilD	Vibrio campbellii strain DS40M4	51.579	98.276	0.507
pilD	Acinetobacter baumannii D1279779	51.056	97.931	0.5
pilD	Acinetobacter nosocomialis M2	50.704	97.931	0.497
pilD	Neisseria gonorrhoeae MS11	47.101	95.172	0.448