Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J3989_RS10045 Genome accession   NZ_AP024489
Coordinates   2029380..2029661 (-) Length   93 a.a.
NCBI ID   WP_002214428.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2024380..2034661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS10010 (NMNIID777_18770) - 2024679..2025317 (-) 639 WP_002243790.1 7-carboxy-7-deazaguanine synthase QueE -
  J3989_RS10015 (NMNIID777_18780) - 2025314..2025685 (-) 372 WP_002243791.1 DUF1304 domain-containing protein -
  J3989_RS10020 (NMNIID777_18790) queD 2025954..2026376 (-) 423 WP_002222912.1 6-carboxytetrahydropterin synthase QueD -
  J3989_RS10025 (NMNIID777_18800) - 2026383..2026901 (-) 519 WP_002243792.1 DUF1543 domain-containing protein -
  J3989_RS10030 (NMNIID777_18810) queC 2026929..2027588 (-) 660 WP_002214426.1 7-cyano-7-deazaguanine synthase QueC -
  J3989_RS10940 - 2027792..2027978 (-) 187 Protein_1956 NAD(P)H-quinone oxidoreductase -
  J3989_RS10040 (NMNIID777_18830) - 2028133..2029359 (+) 1227 WP_002217875.1 YihY family inner membrane protein -
  J3989_RS10045 (NMNIID777_18840) comA 2029380..2029661 (-) 282 WP_002214428.1 ATP-binding cassette domain-containing protein Regulator
  J3989_RS10050 - 2029740..2029874 (-) 135 Protein_1959 IS1595 family transposase -
  J3989_RS10055 (NMNIID777_18850) - 2029873..2030331 (-) 459 WP_002214429.1 hypothetical protein -
  J3989_RS10060 (NMNIID777_18870) - 2030895..2031098 (-) 204 WP_002261355.1 hypothetical protein -
  J3989_RS10065 (NMNIID777_18880) - 2031662..2032597 (-) 936 WP_002250026.1 immunity 49 family protein -
  J3989_RS10070 (NMNIID777_18890) - 2032600..2033220 (-) 621 WP_207177024.1 hypothetical protein -
  J3989_RS10075 (NMNIID777_18900) - 2033343..2033744 (-) 402 WP_101126785.1 DUF596 domain-containing protein -
  J3989_RS10080 (NMNIID777_18910) - 2033781..2034203 (-) 423 WP_002238291.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10070.73 Da        Isoelectric Point: 6.7158

>NTDB_id=72674 J3989_RS10045 WP_002214428.1 2029380..2029661(-) (comA) [Neisseria meningitidis strain NIID777]
MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=72674 J3989_RS10045 WP_002214428.1 2029380..2029661(-) (comA) [Neisseria meningitidis strain NIID777]
ATGATTCACGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

45.977

93.548

0.43
  comA Streptococcus pneumoniae Rx1

43.956

97.849

0.43
  comA Streptococcus pneumoniae D39

43.956

97.849

0.43
  comA Streptococcus pneumoniae R6

43.956

97.849

0.43
  comA Streptococcus pneumoniae TIGR4

43.956

97.849

0.43
  comA Streptococcus mitis NCTC 12261

43.956

97.849

0.43
  comA Streptococcus gordonii str. Challis substr. CH1

42.857

97.849

0.419

Multiple sequence alignment