Detailed information NTG0726689

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: NYP20_RS28530
• Genome accession: NZ_CP103965
• Coordinates: 6436106..6437599 (+)
• Length: 497 a.a.
• NCBI ID: WP_259497514.1
• Uniprot ID: -
• Organism: Pseudomonas sp. N3-W
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6431106..6442599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NYP20_RS28495 (NYP20_28495)	-	6431302..6432006 (+)	705	WP_259497495.1	HAD family hydrolase	-
NYP20_RS28500 (NYP20_28500)	sutA	6432108..6432434 (-)	327	WP_259497496.1	transcriptional regulator SutA	-
NYP20_RS28505 (NYP20_28505)	-	6432537..6432962 (-)	426	WP_259497497.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
NYP20_RS28510 (NYP20_28510)	-	6433177..6434514 (-)	1338	WP_259497500.1	ammonium transporter	-
NYP20_RS28515 (NYP20_28515)	glnK	6434550..6434888 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
NYP20_RS28520 (NYP20_28520)	-	6435304..6435564 (+)	261	WP_259497511.1	accessory factor UbiK family protein	-
NYP20_RS28525 (NYP20_28525)	-	6435618..6435932 (-)	315	WP_259497513.1	HigA family addiction module antitoxin	-
NYP20_RS28530 (NYP20_28530)	comM	6436106..6437599 (+)	1494	WP_259497514.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
NYP20_RS28535 (NYP20_28535)	-	6437606..6438820 (-)	1215	WP_259497515.1	aldose 1-epimerase family protein	-
NYP20_RS28540 (NYP20_28540)	-	6438910..6439494 (-)	585	WP_259497523.1	TetR/AcrR family transcriptional regulator	-
NYP20_RS28545 (NYP20_28545)	-	6439610..6440533 (+)	924	WP_259497525.1	ABC transporter six-transmembrane domain-containing protein	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 52977.09 Da
• Isoelectric Point: 8.0496

>NTDB_id=726689 NYP20_RS28530 WP_259497514.1 6436106..6437599(+) (comM) [Pseudomonas sp. N3-W]
MSLSIVHSRAQVGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGEVRAVRGVLPAALAARKAGRALLVPRANAEEACLASGLKVFAVDHL
LQAVAHFNGHTPVEPYVSNGLLHASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAPKP
GDDTVTAALLVANARERQQKRQGCANAFLDLPGLRTHCTLSTVDEKWLESACERLTLSLRAAHRLLKVARTLADLEQVDG
ITREHLAEALQYRPTAS

Nucleotide

• Length: 1494 bp

>NTDB_id=726689 NYP20_RS28530 WP_259497514.1 6436106..6437599(+) (comM) [Pseudomonas sp. N3-W]
ATGTCCCTCTCCATCGTCCACAGCCGCGCACAAGTCGGCGTCGATGCCCCTGCCGTCACCGTAGAAGTTCATCTGGCCAA
CGGCTTGCCATCGCTGACGATGGTCGGCCTGCCCGAAGCGGCCGTGAAGGAAAGCAAAGATCGGGTGCGTAGCGCGATCA
TCAACTCCGGCCTGCAGTTTCCGGCGCGGCGTATCACGTTGAATCTTGCTCCGGCGGATTTGCCGAAGGACGGCGGTCGT
TTCGATCTGGCGATTGCCCTGGGGATTCTCTCCGCCAGCGTGCAGGTGCCGACACTGACGCTGGATGATGTGGAGTGCCT
GGGGGAGTTAGCGTTGTCGGGCGAGGTGCGGGCGGTTCGCGGGGTGTTGCCGGCGGCGCTGGCAGCACGCAAGGCCGGGC
GGGCGCTGCTGGTGCCGCGGGCCAATGCCGAGGAGGCCTGTCTCGCCTCGGGGCTAAAGGTGTTTGCGGTGGATCACCTG
CTGCAAGCGGTGGCGCATTTCAACGGCCATACGCCCGTGGAGCCCTATGTTTCCAATGGTTTGCTGCACGCCAGTAAACC
TTACCCCGACTTGAATGAGGTGCAGGGCCAACTCGCGGCCAAGCGGGCGTTGCTGATCGCGGCGGCGGGTGCTCATAACT
TGTTGTTCAGCGGGCCACCTGGAACCGGGAAAACGTTGCTGGCCAGCCGTTTGCCCGGGCTGTTGCCGCCCTTGGCCGAG
AACGAAGCGCTGGAGGTTGCGGCGATTCAATCGGTGGCCAGTTGTGTGCCGTTGAGCCATTGGCCGCAACGCCCTTTCCG
TCAACCGCACCACTCCGCCTCAGGGCCGGCGCTGGTCGGTGGCGGCTCGAAACCACAACCCGGCGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGACGAACTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTCTTGAGGGAGCCGCTGGAATCC
GGGCACATCGTGATTTCCCGTGCACGGGACCGGGTTCGTTTCCCGGCACGCTTCCAGCTGGTTGCCGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAGCCCAGCGGCAAATGCAGTTGCACGCCGGACATGGTGCAGCGTTATCGCAACAAACTGT
CGGGGCCGCTGCTGGATCGCATCGATCTGCACCTCACCGTTGCCCGGGAAGCCACAGCGTTGAACCCGGCCCCCAAACCC
GGTGACGACACTGTCACTGCCGCGTTGCTGGTCGCCAATGCCAGGGAGCGCCAGCAAAAACGTCAGGGTTGTGCCAATGC
TTTCCTTGATCTGCCGGGCCTGCGCACTCACTGCACGTTATCCACAGTCGATGAAAAATGGCTGGAATCGGCCTGTGAAC
GCCTGACGTTATCGTTACGTGCCGCCCATCGACTGCTCAAGGTAGCCCGCACCTTGGCGGACCTTGAGCAAGTCGACGGC
ATCACTCGCGAGCATCTGGCCGAAGCGCTGCAGTACCGCCCGACAGCGAGCTGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (407-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	54.545	99.598	0.543
comM	Vibrio cholerae strain A1552	54.343	99.598	0.541
comM	Glaesserella parasuis strain SC1401	52.6	100	0.529
comM	Haemophilus influenzae Rd KW20	52.705	100	0.529
comM	Legionella pneumophila str. Paris	50	99.799	0.499
comM	Legionella pneumophila strain ERS1305867	50	99.799	0.499
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.6	100	0.459