Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FGKAn22_RS00270 Genome accession   NZ_AP019536
Coordinates   59676..61166 (-) Length   496 a.a.
NCBI ID   WP_212786009.1    Uniprot ID   A0AAN1VZB7
Organism   Ferrigenium kumadai strain An22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 54676..66166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGKAn22_RS00260 (FGKAn22_00520) metH 55349..59035 (-) 3687 WP_212786007.1 methionine synthase -
  FGKAn22_RS00265 (FGKAn22_00530) - 59208..59663 (+) 456 WP_212786008.1 bacteriohemerythrin -
  FGKAn22_RS00270 (FGKAn22_00540) comM 59676..61166 (-) 1491 WP_212786009.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FGKAn22_RS00275 (FGKAn22_00550) - 61170..61406 (-) 237 WP_212786010.1 accessory factor UbiK family protein -
  FGKAn22_RS00280 (FGKAn22_00560) - 61645..62487 (+) 843 WP_212786011.1 TorF family putative porin -
  FGKAn22_RS00285 (FGKAn22_00570) - 62533..62871 (+) 339 WP_212786012.1 P-II family nitrogen regulator -
  FGKAn22_RS00290 (FGKAn22_00580) amt 62882..64384 (+) 1503 WP_281411881.1 ammonium transporter -
  FGKAn22_RS00295 (FGKAn22_00590) - 64519..65409 (+) 891 WP_212786013.1 recombination-associated protein RdgC -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53053.61 Da        Isoelectric Point: 6.8748

>NTDB_id=72667 FGKAn22_RS00270 WP_212786009.1 59676..61166(-) (comM) [Ferrigenium kumadai strain An22]
MGLAVLYSRALSGMEAALVTVEVHIANGLPNFTIVGLPETEVKESKDRVRAALQNCQFEFPARRITVNLAPADLPKESGR
FDLPIALGILAATNQIPADKLSEYEYAGELALTGELRAIRGALAMTYRAAGSGRAFILPQANAAEAALVDDAAVYPAQTL
LQVAAHLAGREAIMPYAGSPQAVAPHYPDMSEVKGQAQAKRALEIAAAGGHSVLMVGPPGTGKSMLASRFPGILPQMTET
EALQSAAVQSLDGSFDVARWKMRPYRSPHHTASGVALVGGGSNPRPGEVSMALHGVLFLDELPEFDRNVLEVLREPLESG
HITISRAARRADFPAQFQLVAAMNPCPCGYLGHYNGKCRCTPDQIARYRSKISGPLLDRIDIQIEVPAVPQEDLLGKADG
ESSGEVQARVEVARQRQLARQAKANAQLSVTEIDELCAPDAQGAALLQSAISRLNLSARAYHRVLKVARSIADLEGSDGI
ATRHIAEAVQYRRLNF

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=72667 FGKAn22_RS00270 WP_212786009.1 59676..61166(-) (comM) [Ferrigenium kumadai strain An22]
ATGGGCCTCGCGGTCCTCTATAGCCGCGCCCTCTCCGGCATGGAGGCCGCACTGGTGACCGTCGAGGTACACATCGCCAA
CGGTCTGCCCAACTTCACCATCGTCGGTTTGCCGGAGACCGAGGTGAAGGAAAGCAAGGATCGTGTGCGCGCCGCGCTGC
AGAACTGCCAGTTCGAATTCCCCGCACGGCGCATCACAGTCAATCTCGCGCCAGCCGACCTTCCCAAGGAAAGCGGCCGC
TTCGATCTGCCCATCGCGCTGGGCATCCTCGCCGCCACGAACCAGATTCCCGCCGATAAACTGAGCGAATATGAATACGC
CGGAGAGCTTGCGCTGACCGGCGAGCTGCGTGCTATCCGCGGCGCACTGGCGATGACCTACCGCGCCGCCGGCAGCGGCC
GCGCCTTCATCCTCCCGCAAGCGAACGCCGCCGAGGCCGCGCTGGTGGATGATGCGGCAGTGTATCCGGCGCAAACGCTG
TTGCAGGTGGCTGCGCATCTCGCCGGACGCGAGGCGATCATGCCTTATGCCGGATCACCGCAGGCCGTCGCGCCGCACTA
CCCGGACATGTCCGAAGTGAAGGGACAGGCGCAGGCCAAGCGCGCCCTGGAGATCGCCGCCGCGGGCGGGCACAGTGTCC
TGATGGTCGGCCCGCCGGGCACGGGCAAGTCCATGTTGGCGTCGCGCTTCCCCGGCATCCTGCCGCAGATGACGGAGACC
GAGGCATTGCAGAGCGCAGCGGTACAGTCGCTGGACGGCAGCTTCGACGTGGCGAGATGGAAAATGAGACCCTACAGATC
CCCGCACCATACGGCTTCGGGCGTGGCGCTGGTCGGCGGCGGCAGCAACCCTCGCCCCGGCGAAGTCTCGATGGCGCTGC
ACGGCGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGACCGCAACGTACTGGAGGTACTGCGCGAGCCGCTGGAGTCGGGG
CACATCACCATCTCGCGTGCTGCGCGCCGTGCCGATTTCCCCGCGCAGTTTCAGCTCGTCGCGGCGATGAATCCCTGCCC
CTGCGGCTATCTCGGGCACTACAACGGCAAATGCCGCTGCACGCCCGACCAGATCGCGCGCTACCGCAGCAAGATATCGG
GGCCGTTGCTGGACCGTATCGACATCCAGATCGAGGTGCCCGCCGTGCCGCAGGAAGACCTGCTCGGCAAGGCCGATGGC
GAATCCAGCGGGGAGGTACAGGCCAGAGTCGAAGTTGCGCGGCAACGACAACTCGCGCGCCAGGCCAAAGCCAATGCACA
GCTTTCCGTGACCGAAATCGATGAACTATGCGCACCCGATGCGCAAGGCGCCGCACTGCTGCAGAGTGCCATCTCCCGCC
TCAACCTCTCGGCGCGAGCCTATCACCGGGTACTCAAGGTTGCGCGCAGCATCGCCGACCTGGAAGGCAGCGACGGCATC
GCCACGCGACACATTGCCGAGGCGGTGCAGTACCGCCGTTTGAATTTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55

100

0.554
  comM Vibrio campbellii strain DS40M4

54.509

100

0.548
  comM Glaesserella parasuis strain SC1401

53.28

100

0.54
  comM Haemophilus influenzae Rd KW20

53.4

100

0.538
  comM Legionella pneumophila str. Paris

50.101

100

0.502
  comM Legionella pneumophila strain ERS1305867

50.101

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.337

100

0.472

Multiple sequence alignment