Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NYR30_RS00545 Genome accession   NZ_CP103875
Coordinates   96350..97879 (-) Length   509 a.a.
NCBI ID   WP_066113072.1    Uniprot ID   A0AB36E648
Organism   Gallibacterium salpingitidis strain FC22     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 91350..102879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR30_RS00535 (NYR30_00535) pepT 93627..94919 (+) 1293 WP_231923679.1 peptidase T -
  NYR30_RS00540 (NYR30_00540) dcuC 94919..96277 (+) 1359 WP_197495411.1 anaerobic C4-dicarboxylate transporter DcuC -
  NYR30_RS00545 (NYR30_00545) comM 96350..97879 (-) 1530 WP_066113072.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NYR30_RS13645 - 98019..98126 (-) 108 WP_367401233.1 AraC family transcriptional regulator -
  NYR30_RS00550 (NYR30_00550) - 98108..98836 (-) 729 WP_302501514.1 AraC family ligand binding domain-containing protein -
  NYR30_RS00555 (NYR30_00555) - 98970..99638 (+) 669 WP_066113076.1 molecular chaperone -
  NYR30_RS00560 (NYR30_00560) - 99663..102242 (+) 2580 WP_156536745.1 molybdopterin-dependent oxidoreductase -
  NYR30_RS00565 (NYR30_00565) - 102243..102791 (+) 549 WP_066113080.1 DMSO/selenate family reductase complex B subunit -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55916.52 Da        Isoelectric Point: 9.9295

>NTDB_id=726330 NYR30_RS00545 WP_066113072.1 96350..97879(-) (comM) [Gallibacterium salpingitidis strain FC22]
MSLAIVHSRASIGVQAPLVTIEVHISKGSPGLILVGLPETTVKEARDRVRSALINSNFRYPAQRITINLAPADLPKEGSR
FDLAIALGILAASGQIEAKRLLAFEFVGELALTGNLRSVQGIIPAILAAKKVKRELIIAKQNAAEATLVADTQTYFANTL
LDVVSFLNQQQQLPIAQALEIQQPSSSHPSLDMSDIIGQQHAKRALLIAAAGQHNLLFLGPPGTGKTMLASRLTTLLPEM
NEQEAIETAAINSLVQQQINYQNWKQRPFRAPHHSASMAALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALREP
LESGEIVISRTAAKVTFPARFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQQLP
KDENSSDKLRKIVIQVREKQFARAGKINAHLSGKELEKYCKLQQNDAIFLETALNKLGLSVRAYHRILRVSRTIADLADE
EQIQRSHLAEALGYRAMDRLLQRLTTGIE

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=726330 NYR30_RS00545 WP_066113072.1 96350..97879(-) (comM) [Gallibacterium salpingitidis strain FC22]
ATGTCACTAGCCATCGTTCATAGTCGTGCTTCAATTGGGGTACAAGCGCCGCTTGTTACTATTGAAGTGCATATTAGCAA
AGGTTCTCCAGGTCTAATTTTAGTTGGATTACCAGAAACCACAGTCAAAGAAGCAAGAGATAGAGTAAGAAGTGCCTTAA
TTAACAGTAATTTTCGTTATCCAGCACAACGTATCACTATCAATTTAGCACCTGCAGATTTGCCTAAAGAAGGTAGTCGC
TTTGATCTTGCCATCGCTTTAGGGATTTTAGCTGCTTCTGGGCAGATAGAGGCGAAGCGGTTACTCGCGTTTGAATTTGT
TGGTGAATTGGCTTTAACAGGAAACTTACGCAGTGTACAAGGGATTATCCCTGCTATTCTTGCAGCGAAAAAAGTCAAAC
GAGAATTAATTATCGCGAAACAAAATGCCGCAGAAGCGACGTTAGTTGCAGATACACAAACCTATTTCGCCAACACTTTA
TTAGATGTTGTCAGTTTCCTAAATCAACAACAGCAACTACCTATCGCGCAAGCATTAGAGATTCAGCAACCCTCATCCTC
TCATCCATCATTAGATATGTCCGATATTATTGGGCAGCAACACGCTAAACGTGCTTTATTAATTGCCGCCGCCGGGCAAC
ATAATCTATTATTTCTTGGCCCACCTGGAACAGGAAAAACCATGTTAGCCAGTCGCCTAACAACCTTATTACCAGAAATG
AATGAACAAGAGGCGATTGAAACTGCTGCAATTAATAGCTTGGTTCAACAGCAGATTAATTACCAAAATTGGAAACAACG
CCCTTTTCGAGCACCGCATCATAGCGCTTCCATGGCAGCCTTAGTTGGTGGCGGTACTATCCCAAAACCGGGAGAAATTT
CCTTAGCTCATAATGGCGTACTCTTTTTAGATGAATTACCGGAATTTGAACGTAAAGTATTAGATGCGTTACGAGAACCA
TTGGAAAGTGGAGAAATTGTGATTTCGAGAACCGCTGCCAAAGTCACTTTTCCAGCAAGATTTCAACTAATTGCGGCAAT
GAATCCTAGCCCAACCGGGCATTATCAAGGCACACATAATCGCACATCTCCACAACAAATTATGCGTTACTTAAACCGTT
TATCCGGGCCATTTTTAGATCGCTTTGATCTTTCCATTGAAGTGCCACTATTACCGCAAGGAACACTACAACAATTACCC
AAAGATGAAAATAGTAGCGATAAACTGCGCAAAATAGTGATTCAGGTACGTGAAAAACAATTTGCTAGAGCAGGTAAAAT
TAATGCTCATCTCTCTGGCAAAGAGTTGGAAAAGTATTGCAAGTTACAACAAAATGATGCGATTTTTCTTGAAACTGCGT
TAAATAAATTAGGTTTATCCGTTCGCGCTTATCATCGAATTTTACGCGTTTCCCGTACTATCGCTGATCTTGCAGATGAA
GAACAAATCCAACGTTCACATCTCGCTGAAGCGCTTGGCTATCGCGCTATGGATCGGTTATTACAACGTTTAACCACTGG
TATAGAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

75.882

100

0.76
  comM Glaesserella parasuis strain SC1401

75.148

99.607

0.749
  comM Vibrio cholerae strain A1552

65.81

99.411

0.654
  comM Vibrio campbellii strain DS40M4

63.564

99.214

0.631
  comM Legionella pneumophila str. Paris

51.992

98.625

0.513
  comM Legionella pneumophila strain ERS1305867

51.992

98.625

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.898

100

0.462