Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NYR19_RS01690 Genome accession   NZ_CP103874
Coordinates   346821..348359 (-) Length   512 a.a.
NCBI ID   WP_302508657.1    Uniprot ID   -
Organism   Gallibacterium anatis strain TH22     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 341821..353359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR19_RS01690 (NYR19_01690) comM 346821..348359 (-) 1539 WP_302508657.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NYR19_RS01695 (NYR19_01695) lipA 348504..349466 (-) 963 WP_021461955.1 lipoyl synthase -
  NYR19_RS01700 (NYR19_01700) lipB 349476..350213 (-) 738 WP_302508658.1 lipoyl(octanoyl) transferase LipB -
  NYR19_RS01705 (NYR19_01705) ybeD 350227..350502 (-) 276 WP_026211015.1 DUF493 family protein YbeD -
  NYR19_RS01710 (NYR19_01710) - 350719..351903 (-) 1185 WP_302508659.1 serine hydrolase -
  NYR19_RS01715 (NYR19_01715) - 351926..352762 (-) 837 WP_018346349.1 septal ring lytic transglycosylase RlpA family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 56190.86 Da        Isoelectric Point: 9.7997

>NTDB_id=726313 NYR19_RS01690 WP_302508657.1 346821..348359(-) (comM) [Gallibacterium anatis strain TH22]
MSLAVVYSRASIGVQAPLITIEVHMSNGAPGLTLVGLPETTVKEARDRVRSALINANFVYPTQRITINLAPADLPKEGGR
FDLPIALGILAASGQIDAKRLQSFEFVGELALTGNLRGVQGVIPAILAANNAKRELIIAKQNAQEATLVANTQTYFADSL
LDVVSFLNQQQKLPIAQQLPPVSHSKNPHLLDMTDIIGQQHAKRALLIAAAGQHNLLFLGPPGTGKTMLASRLTTLLPEM
TEQEAIETAAINSLVQRCVDYQHWKQRPFRSPHHSASMAALVGGGTIPKPGEISLAHNGVLFLDELPEFNRKVLDALREP
LESGEIIISRTAAKVTFPAKFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQQLP
KDENNSEKLKHIVIQARKKQLSRCGKINAHLSGKEIEQYCKLNQDDAIFLENALNKLGLSVRAYHRILRVSRTIADLAGE
EQIQRIHLAEALGYRAMDRLLQRLTANINNAI

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=726313 NYR19_RS01690 WP_302508657.1 346821..348359(-) (comM) [Gallibacterium anatis strain TH22]
ATGTCATTAGCAGTTGTTTACAGCCGTGCCTCTATCGGAGTGCAGGCACCATTAATCACGATCGAAGTTCATATGAGTAA
CGGCGCGCCGGGGTTAACCTTGGTCGGCTTACCGGAAACCACCGTAAAAGAGGCAAGAGATCGTGTCCGCAGTGCCTTAA
TCAATGCTAATTTTGTCTATCCGACACAACGCATTACTATTAATCTGGCACCGGCGGATCTGCCGAAAGAGGGCGGGCGC
TTTGATCTTCCCATCGCCTTAGGCATTTTGGCGGCTTCCGGGCAAATTGATGCTAAGCGGTTACAATCTTTCGAATTTGT
CGGTGAACTGGCACTTACTGGAAATTTACGTGGCGTACAAGGCGTTATTCCGGCTATTTTGGCGGCGAATAACGCAAAAC
GTGAATTAATTATCGCCAAACAAAATGCTCAAGAAGCAACCTTAGTTGCCAATACACAAACCTATTTTGCCGACTCGCTA
TTAGATGTTGTCAGTTTTTTGAATCAGCAACAAAAATTGCCGATAGCACAACAATTACCGCCAGTTTCCCATTCTAAAAA
CCCCCATTTACTGGATATGACCGATATTATCGGACAACAACACGCTAAACGAGCTTTACTCATTGCTGCTGCCGGACAGC
ATAATCTCCTCTTTTTAGGGCCACCCGGTACAGGCAAAACTATGTTAGCAAGTCGATTAACAACACTATTACCAGAGATG
ACAGAACAAGAAGCGATAGAAACTGCTGCCATTAATAGCTTAGTACAACGTTGTGTGGATTATCAGCATTGGAAACAACG
CCCATTCCGCTCACCACATCACAGTGCCTCAATGGCGGCGTTAGTTGGTGGTGGCACTATTCCTAAACCGGGAGAAATTT
CTCTTGCTCATAATGGTGTACTTTTTTTAGATGAATTACCGGAATTTAATCGAAAAGTACTTGATGCCTTGCGAGAGCCA
TTAGAGAGTGGCGAAATTATTATCTCTCGTACGGCAGCTAAAGTTACCTTTCCAGCAAAATTTCAACTGATCGCTGCAAT
GAACCCTAGCCCAACAGGGCATTATCAAGGCACACATAACCGTACCTCGCCGCAACAGATTATGCGCTACCTTAATCGGT
TATCCGGTCCATTTCTTGACCGCTTTGATCTGTCAATTGAAGTGCCGTTACTGCCACAAGGCACTTTGCAACAATTACCT
AAAGACGAAAACAACAGTGAAAAATTAAAACATATCGTGATACAGGCGAGGAAAAAACAACTCTCTCGTTGCGGAAAAAT
TAATGCCCATTTATCTGGCAAAGAGATCGAACAATATTGCAAATTAAACCAAGATGATGCCATTTTTCTTGAAAATGCAT
TAAATAAACTTGGGCTTTCTGTTAGAGCCTATCATCGCATTTTACGAGTTTCTCGCACTATCGCCGATCTGGCAGGTGAA
GAGCAAATCCAACGCATTCATCTAGCTGAAGCACTAGGTTATCGTGCTATGGATCGATTATTACAGCGTTTAACCGCTAA
TATCAATAACGCCATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

75.937

99.023

0.752
  comM Glaesserella parasuis strain SC1401

75.889

98.828

0.75
  comM Vibrio cholerae strain A1552

64.822

98.828

0.641
  comM Vibrio campbellii strain DS40M4

63.834

98.828

0.631
  comM Legionella pneumophila str. Paris

51.394

98.047

0.504
  comM Legionella pneumophila strain ERS1305867

51.394

98.047

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.575

99.805

0.465